Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1567 136 4e-27 seq2606 122 8e-23 seq1051 120 3e-22 seq389 116 4e-21 seq880 100 3e-16 seq2528 95.1 1e-14 >seq1567 Length=70164 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| |||| || |||||| ||| || ||||| || || Sbjct 49829 CGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCGAGCTGCTTGCC 49888 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||| | ||||||||||| || || ||||||||||||||| ||| |||||||| Sbjct 49889 GGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 49948 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || |||| |||| | ||||| ||| || |||| || | || ||||| |||| || Sbjct 49949 GACGTTG-TCGATCGAGTCCGAGGGCTCAACGTCGAGCGTGATGGTCTTGCCAGTCAAAG 50007 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || || ||||||||||| Sbjct 50008 TCTTGACGAAAATCTGCAT 50026 >seq2606 Length=15791 Score = 122 bits (134), Expect = 8e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| || | |||||| || || ||||| || || Sbjct 3567 CGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCAAGCTGCTTGCC 3508 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||| | ||||||||||| || || ||||||||||||||| ||| |||||||| Sbjct 3507 GGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 3448 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || |||| |||| | ||||| | |||||| |||| || | || || || |||| || Sbjct 3447 GACGTTG-TCGATCGAGTCCGAAGGCTCGACGTCGAGCGTGATGGTCTTACCCGTCAAAG 3389 Query 127095 TTTTTACAAAAATCTGCATGG 127115 | || || || |||||||||| Sbjct 3388 TCTTGACGAAGATCTGCATGG 3368 >seq1051 Length=134064 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||| | || | ||| ||||| || || || ||||| || Sbjct 119956 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 119897 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||| | ||||||||||| || || Sbjct 119896 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGA 119837 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| |||||||| | |||| || | || ||||| |||||| Sbjct 119836 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG-TCAATGGAGTCCGACGGCTCGAC 119778 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTT 127118 |||| ||| | || ||||| ||||| || || || || || ||||||| || Sbjct 119777 ATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATTTGCATGGTTT 119725 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| || | ||||| || || ||||| || || Sbjct 120155 CGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 120096 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||| | ||||||||||| || || ||||||||||||||| ||| |||||||| Sbjct 120095 GGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTT 120036 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | |||| || | || ||||| |||||| |||| ||| | || ||||| ||||| | Sbjct 120035 CACGTTG-TCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGCG 119977 Query 127095 TTTTTACAAAAATCTGCATG 127114 | || || || ||||||||| Sbjct 119976 TCTTGACGAAGATCTGCATG 119957 >seq389 Length=167588 Score = 116 bits (128), Expect = 4e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| |||| || |||||| || || ||||| || || Sbjct 110350 CGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCC 110409 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || |||| | |||||||| || || || ||||||||||||||| ||| |||||||| Sbjct 110410 GGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTT 110469 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || |||| || | | ||| | |||||| |||| || | ||| |||||||| || | Sbjct 110470 GACGTTG-TCAATCGAGTCGGACGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTGAGCG 110528 Query 127095 TTTTTACAAAAATCTGCATGG 127115 | || || || || ||||||| Sbjct 110529 TCTTGACGAAGATTTGCATGG 110549 >seq880 Length=46309 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | || | ||| ||||| || || || ||||| || Sbjct 27008 CCACCACGCAGGCGGAGCACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 27067 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||| | ||||||||||| || || Sbjct 27068 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 27127 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| |||||||||| |||| || | | ||||| ||| || Sbjct 27128 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG-TCAATCGAGTCCGAGGGCTCCAC 27186 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || ||||| |||| || || || || ||||||||| Sbjct 27187 GTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATG 27235 >seq2528 Length=14935 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| || | | ||| | | ||||||||||| |||||||||||| ||| Sbjct 4958 GGCATGAACTCGACGCTCATGTGCCAATACATCGAATTCTGCGCCGACCGCCTTCTCAAC 4899 Query 47472 CAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 || ||||| | | |||| || |||| |||||||| | ||| | | || Sbjct 4898 GCCCTTGGCGCCACCAAGCTCTTCCACGCCAAGAACCCATTCGACTGGATGGATATGATC 4839 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || ||| |||||||||||||||| |||||||||||||||||||| || Sbjct 4838 TCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 4792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475482600206880