Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq400 244 1e-59 seq2528 156 5e-33 seq2543 98.7 1e-15 >seq400 Length=224259 Score = 244 bits (270), Expect = 1e-59 Identities = 1005/1555 (65%), Gaps = 75/1555 (5%) Strand=Plus/Minus Query 115841 TGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 115900 |||| |||| || ||||| ||| ||||| | ||| || ||||| || ||| | | Sbjct 137130 TGAGTTCCTTCATGAGGTACTTGTTGACGATCGTAAATTCGCCCGCAAGCACGCGCCGCG 137071 Query 115901 GATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGG 115960 || ||||||| |||| ||||||| | | | || ||||| || | ||| |||||||| | Sbjct 137070 AGTACATGTTGGACGTGAATGGCTCGATGGATTCGTTGTTGCCGAGGATCTGGGCTGTCG 137011 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC-----CACCCCCCTAAT 116015 | || |||||||| || |||| || || |||||| | || || || ||| Sbjct 137010 ATGCCGTGGGCATCGGCGCCAGCAGTAGAGAGTTGCGCACGCCATGAGCAGCCACCT--- 136954 Query 116016 GCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC----TCCCCCTCCCACATAT 116071 ||| ||||||| | ||||||| || || | ||| || | | ||||||| | Sbjct 136953 GCG--CCTTGAGCGTCGCCCAGTCCCAG---AGATCAGTCGGCGTCACAC-CCCACATGT 136900 Query 116072 CAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAA 116131 | |||||| | || ||||| | ||||| || | ||||| || ||||| | Sbjct 136899 CGTACTGGAAGCGGCCCTGGGAGACGGGCGACCCGGAGTACGTCTCGTAGGGGCCG---A 136843 Query 116132 CCTCCGCCAATTCG-GAGCTCGCCTCGAGGGCT--------GCGTGATACATTGTCTCAA 116182 || | || | |||||| | |||| | || ||||| || || ||||||| Sbjct 136842 GCTGC-----TTGGCGAGCTC-CATCGAAGTCTCCATAGAGGCGTGGTAGATCGTCTCAA 136789 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGACGGCACAAA-AT 116240 | || | || | |||||||||| || || |||| | || | || | || Sbjct 136788 AGATCTGGATGTTGAGCTTCTTGGCCTCGGGCGACTCGAACGGGTAGCC--CATGAGGAT 136731 Query 116241 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 116300 || |||||||||| || |||||||||| ||| | ||||| || | ||| || || Sbjct 136730 GAAGGCATCCGCGAGGCCCTGGACACCGATGCCGACGGGGCGGTGGCGCATGTTGCTGTT 136671 Query 116301 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 116360 || || ||| | || || | || || || ||| | || | || |||||| Sbjct 136670 GCGCGCCTCCTCGATCGGGTAGTAGTTGACGTCAATCACCTTGTTCAAGTTGCGGGTGAC 136611 Query 116361 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 116420 | ||| |||| | || || || | | || || || | | ||| | ||| | Sbjct 136610 GATCTTGGTGACCTTGTGGAGGTTCTTAAAGTCGAA-----GACAC-CGTCAGTAACAAA 136557 Query 116421 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 116480 ||| | || || || ||||| || || ||||||| | ||| ||||| |||||||| Sbjct 136556 CTTGGAGAGCGCAATGGACGCGAGGTTGCACACAGCGACCTCGTCCTTGCTCGTGTACTC 136497 Query 116481 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540 || | ||| || | || ||||| || || || | ||||| || || ||||| Sbjct 136496 GATGACTTCGCAGCAAAGGTTACTGCTCTTGATCGTACCAAGGTTCTGCTGGTTCGACTT 136437 Query 116541 TGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 116600 | || ||||| |||||||| ||||| || ||||| || ||||| | || || | ||| Sbjct 136436 GGAATTGCACGCGTCCTTGTAAAGCATGTAGGGCGTGCCAGTCTCGATCTGCGAATCGAG 136377 Query 116601 AATAGCCTTCCATACATCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCT 116656 || || ||| || | | | ||| | || | ||| || || ||||| ||| Sbjct 136376 CATCGCAAACCA--CAGCTGTTG--GGCCTTGATGACCTTGCGAGCGCGACCCTCTGCCT 136321 Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCC 116715 ||||||| | ||| || || || ||||| | ||| |||| || | ||| || || || Sbjct 136320 CGTACTTGGCGTACAGCGCTTCGAACTCGGCGCCC-CAGCAGTCGGCGAGACCAGGGGCT 136262 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | | || || ||||| ||| | || ||| || ||||||||||| || || Sbjct 136261 TCGTTCGGGCAAAAGAGGCTCCACTCCCCGTTGGACTCGACGCGCTTCATGAACAGATCG 136202 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTC--TTCATCCCCCTGATTGA 116833 |||||||| | || ||||||| || || ||| | | | ||| | || || || Sbjct 136201 GGGATCCACATGGCATAGAAGAGGTCGCGC--GCGCGGTGCAGTTCGTTGCCGTGGTTCT 136144 Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 116893 | || | || || | ||||||||||||||||| || ||||||| || | | Sbjct 136143 TCTTGAGGTCAAGGAACTCGAAAATATCCGCGTGCCACGGCTCAAGGTACATGGCAAAAG 136084 Query 116894 ACCCCTTGCGACGACCA--GCCT-GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAA 116950 | ||||| || |||| |||| ||| || || | ||| || |||| || ||||||| Sbjct 136083 AGCCCTTCCGCTTACCACCGCCTTGGTCCACGTAACGCGCTGTATCGTTGAACACGCGAA 136024 Query 116951 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTC 117010 |||| ||||||||||| | ||| ||| || || || ||||| | |||||| || Sbjct 136023 GCATGGGAATGATACCGTTAGAGGAGCCGTTCGTGCCACGAATGT---AGCTGTTGG-TC 135968 Query 117011 TGACA----TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066 || | ||| |||| | |||||| || || |||||||| || || |||||| Sbjct 135967 GAACGAATGTTGTGAATGTTGACACCAATGCCACCGGCCCACTTGGAAATGCAGGCGCAC 135908 Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 117126 | | | || | |||| || || || || ||||| | | |||| |||||||| Sbjct 135907 TGCTTCAGCGTATCGTAAATGCCCTCAATTGAGTCGTCGCGCATGGCGAGAAGGAAGCAC 135848 Query 117127 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||| | ||||| | || ||||| ||||||||||| || || |||||||| |||| Sbjct 135847 GACGAGAGCTGTGGACGAGGCGTACCGGCGTTGAAGAGAGTAGGCGTCGCGTGCGTGAA- 135789 Query 117187 ATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAAT 117245 ||| || ||| | ||||| || | | | | |||||| ||| ||| || Sbjct 135788 GTACAACTGACTCATGTACTCGTACGTGTTGAGCGCCGCCTCAATGTCCTCCTTGTGGAT 135729 Query 117246 ACCGATTGAGACCCGCATAAACATGTATTG-GGGTGTTTCCATCAGGATACCATCGAGCC 117304 ||||| | || ||||| | ||| | || ||| ||| || || | ||| || | Sbjct 135728 ACCGACAGCAACACGCATGATCATATGCTGCGGGCGTTCGCA-CACCTTGTCATTGACAC 135670 Query 117305 TCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTC 117359 | | || || ||||| || | ||||||| ||||| ||| | | ||| |||| Sbjct 135669 GCAGAAGATAGCTCTTTTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTC 135615 >seq2528 Length=14935 Score = 156 bits (172), Expect = 5e-33 Identities = 558/857 (65%), Gaps = 28/857 (3%) Strand=Plus/Plus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || ||||| ||||||||||||||||| ||||| || | |||| ||| | Sbjct 4785 CTTGGAGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATCAT 4844 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTG 127342 ||||| | || ||||||||||| | || | | ||| |||| || || ||| Sbjct 4845 ATCCATCCAGTCGAATGGGTTCTTGGCGTGGAAGAGCTTGGTGGCGCC--AAGGGCGTTG 4902 Query 127343 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 127402 || || || || | | | | || ||||| | |||| | |||||||| |||||| Sbjct 4903 AGAAGGCGGTCGGCGCAGAATTCGATGTATTGGCACATGAGCGTCGAGTTCATGCCGATG 4962 Query 127403 AGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTAC 127461 || | ||| ||||||| || | | |||| |||||| || || || || || | | Sbjct 4963 AGTTCGACA-GGGAGCGATTCGGAAACGAACTGCTTCTCGATCTCGACGGCGTCACCGAT 5021 Query 127462 GATGGCGTGAATAGTGTCC----ACCCCAGGTCTATT-GCGTAAAGT-CTTGAAGAGTTC 127515 ||| | || || || | | || || || | ||| | ||| | Sbjct 5022 GATCTCATGGATGCGCTCGTTTGAGAGCTTGTTGATGAGCTTCGAGTACATGAGG----- 5076 Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 || || || || ||| || || ||||| || |||||||| |||||||| |||| || Sbjct 5077 CAG-GCGAAGTCGCAGTGAAGGCCTTCGTCGCGCGAGATGAGCTCATTCGAAAAGCTCAA 5135 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 || ||||||||||| |||||||| | |||||| || | || || |||||||||||||| Sbjct 5136 GCCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAA 5195 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTG-TA 127693 || || || ||| ||||| |||| | || ||||| ||| ||| || || | | Sbjct 5196 AATGCCTTCGACAGCAGCGAAGGCAACGATGCGTTCGGCGTAAGCAGC--GATTTGGTTG 5253 Query 127694 TCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC- 127752 | ||||||| | ||||||||| ||||| || || ||| |||| || | ||| || Sbjct 5254 TTGCACCACTTGAGCGCCCACTGGGCCTTGCGCTGGACACACGGGATCGTGTCGATGGCG 5313 Query 127753 --TTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAA 127810 | | | ||||||| | | || || ||||||||| | || || ||| || Sbjct 5314 CGGAGCACGCGGTCCTTCTCAACCG-TG--TCCTTGATGTACGTGTCAATAAGTAGCGAG 5370 Query 127811 TATGTTTCGCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCG 127870 || |||| ||||| ||||| || | |||| | | ||||| | || ||||| Sbjct 5371 TAGACTTCGGAGTGGATGTTTTCAATAGCGATCTGAAAGCCATAGAAGCAACGAGCTTCA 5430 Query 127871 CTTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGAC 127930 | ||| || || | || || || | | |||||| ||||| || || ||| Sbjct 5431 GGCACCTGAACTTCGTTGGAGAAGTTCATGGCCAAGTTCTCATTTACAATGCCGTCAGAC 5490 Query 127931 CCAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTC 127990 | || || ||||| || | | | | ||||| | || || || | || ||| | Sbjct 5491 GCGGCGAAGAACGCAAGCACGTGCGTGATGAAGAAGCGCTCGTTGTCCGTGAGCTTCTCC 5550 Query 127991 CAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCC 128050 ||||| | ||||| | |||||| | || || || ||||| |||| | ||| Sbjct 5551 CAGTCCTTCAGATCGTGGACGAGATCGAGTTCTTCGGCTGTCCAGAAGCTCGCCTCGGCC 5610 Query 128051 TTCTTATAGAGTTCCCA 128067 ||||| || | |||||| Sbjct 5611 TTCTTGTACATTTCCCA 5627 >seq2543 Length=13544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 280/424 (66%), Gaps = 10/424 (2%) Strand=Plus/Minus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807 || |||||||| ||||||||||||||||| || | ||| || || | |||| ||| | Sbjct 4994 CCCGTGCCAATGCCTTCGGTGCCGTTCACAAGCAGCATGGGCAGGATGGGCACGTAGTAC 4935 Query 175808 TCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATC--CCTCG 175865 ||| || | | | || || |||| | || | |||| || || || ||||| Sbjct 4934 GTTGGCTCGACGGGCTGGCCGTCGTCGTGGACGTACTGCAGCAGCGGTTCGTCGGCCTCG 4875 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCG--TTTGAGA 175923 | | | || | | |||| || | ||||||||||||| || ||| | Sbjct 4874 GGGTACACCAGGCGCGTGTA--CTTGTGCAGGTGCGTGAAGATGTACCGCGGACTTGCG- 4818 Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983 || |||||||| ||| || ||||| ||||| || || | || | | ||| || Sbjct 4817 -GCGTCTTTGCCGCCCTGTAGTCGCGTACCAAACTGCCCCGACGGGTACAAGAGCGGGAG 4759 Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 176042 ||||| | ||| | ||||| | |||| ||||| || || | || | || ||| Sbjct 4758 GTTGTTGGCGCCAACGTAGTCTTGGGCCATGTTGACGATTGTGCTGTGC-AACGACGCTT 4700 Query 176043 CACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCT 176102 ||||||| ||||| |||| | || || || |||| | ||||||||| || | || Sbjct 4699 CACCGTGGTGGTACGCCGTATGCTCGGCGCAGTAGCCCGCGAGCTGCGCCACTTTGACCT 4640 Query 176103 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGC 176162 | | | |||| ||| | |||||||||| | | || || ||||| || |||||||| | Sbjct 4639 CCTTCGTGAGCTTCCGTTTGAAGCACGCAAAGAGCACTTTCCTCTGGGACGGCTTGAGTC 4580 Query 176163 CGTC 176166 |||| Sbjct 4579 CGTC 4576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613483718011920