Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq389 145 2e-29 seq1567 141 2e-28 seq1051 138 3e-27 seq2606 134 3e-26 seq880 116 9e-21 >seq389 Length=167588 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||| |||||||| ||||||||||| |||| ||||||||| || || Sbjct 110327 CGAAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 110386 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||| |||||||| |||||||||||||| ||| || Sbjct 110387 CGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCC 110446 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||| ||| || | | ||| | | || || || | | Sbjct 110447 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCGGACGGCTCGACGTCGAGC 110506 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || ||||| || || || || ||||| Sbjct 110507 GTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTG 110544 >seq1567 Length=70164 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||||||||| ||||||||||| |||| ||||||||| || || Sbjct 49806 CGAAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 49865 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| |||||||||||||| |||||||| ||||| || || Sbjct 49866 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCC 49925 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||| ||| |||| | ||| | | || || || | | Sbjct 49926 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGC 49985 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || ||||| || Sbjct 49986 GTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTG 50023 >seq1051 Length=134064 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 119941 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 119882 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| |||||||| ||||| ||| || || ||| Sbjct 119881 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 119822 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||||| || | || ||| | | || ||||| | ||||| ||| Sbjct 119821 TGGATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTC 119762 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || ||||| Sbjct 119761 TTGCCCGTCAGCGTCTTGACGAAGATTTG 119733 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 120169 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 120110 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| |||||||| ||||| ||| || || ||| Sbjct 120109 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 120050 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||||| || | || ||| | | || ||||| | ||||| ||| Sbjct 120049 TGGATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTC 119990 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || Sbjct 119989 TTGCCCGTCAGCGTCTTGACGAAGATCTG 119961 >seq2606 Length=15791 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || ||||||||||| |||| ||||||||| | | || | || || Sbjct 3581 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCC 3522 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| |||||||| ||||| || || || ||| Sbjct 3521 TCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 3462 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| ||| |||| | ||| | | || || || | |||||| ||| Sbjct 3461 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGCGTGATGGTC 3402 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| | ||| || || || || || Sbjct 3401 TTACCCGTCAAAGTCTTGACGAAGATCTG 3373 >seq880 Length=46309 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || ||||||||||| |||| ||||||||| | | || | || || Sbjct 27023 AGCACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 27082 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| |||||||| ||||| || || || ||| Sbjct 27083 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATACCCTCCTTGTCC 27142 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| ||| || | | ||| | | || || || | |||||| ||| Sbjct 27143 TGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAGGGCTCCACGTCGAGCGTGATGGTC 27202 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || || || || Sbjct 27203 TTGCCCGTCAAGGTCTTGACGAAGATCTG 27231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178875348695154