Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1051 152 6e-32 seq389 147 2e-30 seq880 143 3e-29 seq2606 134 2e-26 seq1567 129 7e-25 >seq1051 Length=134064 Score = 152 bits (168), Expect = 6e-32 Identities = 151/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 119921 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 119862 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| || | || | || |||||||||| |||||||| ||| | ||| Sbjct 119861 GATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 119803 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | | ||| || || ||||| | |||||||| |||||||||||||| || | Sbjct 119802 TGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGA 119743 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 119742 CGAAGATTTGCAT 119730 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 120149 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 120090 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| || | || | || |||||||||| |||||||| ||| | ||| Sbjct 120089 GATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 120031 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | | ||| || || ||||| | |||||||| |||||||||||||| || | Sbjct 120030 TGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGA 119971 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 119970 CGAAGATCTGCAT 119958 >seq389 Length=167588 Score = 147 bits (162), Expect = 2e-30 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| |||||| | | |||| || || || | || |||||| ||||| ||||| Sbjct 110314 TTATTGGCCTCCACGAAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTA 110373 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || ||||| |||| || |||||||||||||| || || | |||||||||||| Sbjct 110374 GTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTC 110433 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | || | || |||||||||| |||||||| ||||| ||| | | | || |||| || Sbjct 110434 CGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCAATCGAGTCGGACG 110492 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | |||||| || ||||| || ||||| || || ||||||||||| Sbjct 110493 GCTCGACGTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 110547 >seq880 Length=46309 Score = 143 bits (158), Expect = 3e-29 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 27043 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 27102 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| || | || | | |||||||||| |||||||| ||||| ||| Sbjct 27103 GATGAGGCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTGA-CGT 27161 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| | ||||| || | ||||||||| |||||||||| || || | Sbjct 27162 TGTCAATCGAGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTGA 27221 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 27222 CGAAGATCTGCAT 27234 >seq2606 Length=15791 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| || ||||||||||||||||| Sbjct 3561 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAA 3502 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| || | || | || |||||||||| |||||||| ||||| ||| Sbjct 3501 GATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGT 3443 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| | || || || | ||||||||| || ||||||| || || | Sbjct 3442 TGTCGATCGAGTCCGAAGGCTCGACGTCGAGCGTGATGGTCTTACCCGTCAAAGTCTTGA 3383 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 3382 CGAAGATCTGCAT 3370 >seq1567 Length=70164 Score = 129 bits (142), Expect = 7e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || |||||||||||||||||||| Sbjct 49835 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 49894 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| || | || | || |||||||||| |||||||| ||||| ||| Sbjct 49895 GATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGT 49953 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| | || || || | ||||||||| ||||| |||| || || | Sbjct 49954 TGTCGATCGAGTCCGAGGGCTCAACGTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTGA 50013 Query 46581 CAAAGATTTGCATTTTGC 46598 | || || ||||| |||| Sbjct 50014 CGAAAATCTGCATATTGC 50031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565216765500240