Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq400 244 1e-59 seq2528 100 4e-16 seq2543 82.4 9e-11 >seq400 Length=224259 Score = 244 bits (270), Expect = 1e-59 Identities = 749/1141 (66%), Gaps = 33/1141 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| | ||| ||||||| || || |||||||||| ||| || ||||| | | Sbjct 135695 CCCGCAGCATATGATCATGCGTGTTGCTGTCGGTATCCACAAGGAGGACATTGAGGCGGC 135754 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | | || ||||| | ||| | || ||| |||| ||||| || || || |||| Sbjct 135755 GCTCAACACGTACGAGTACATGAGTCAGTTGTAC-TTCACGCACGCGACGCCTACTCTCT 135813 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| ||||| || | || || | || || |||||| | || | || | Sbjct 135814 TCAACGCCGGTACGCCTCGTCCACAGCTCTCGTCGTGCTTCCTTCTCGCCATGCGCGACG 135873 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||||| | |||||||||| || || | | || ||| || || |||||||| | Sbjct 135874 ACTCAATTGAGGGCATTTACGATACGCTGAAGCAGTGCGCCTGCATTTCCAAGTGGGCCG 135933 Query 111850 GTGGTATCGGGATGCACATCCATGAT----GTCAGAGCCAACAAGTCTCGTATTAGAGGT 111905 |||| || || | |||| || | || || |||||| | ||| | || Sbjct 135934 GTGGCATTGGTGTCAACATTCACAACATTCGTTCGA-CCAACAGCTAC---ATTCGTGGC 135989 Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 || || || || | ||||| ||||| ||||||||||| || |||| |||||||| Sbjct 135990 ACGAACGGCTCCTCTAACGGTATCATTCCCATGCTTCGCGTGTTCAACGATACAGCGCGT 136049 Query 111966 TATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || || |||||| || || || ||||| ||| | || | || |||||||| ||| Sbjct 136050 TACGTGGACCAAGGCGGTGGTAAGCGGAAGGGCTCTTTTGCCATGTACCTTGAGCCGTGG 136109 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||||||||||| | ||||||||||| | ||||| || | || | | | | Sbjct 136110 CACGCGGATATTTTCGAGTTCCTTGACCTCAAGAAGAACCACGGCAACGAACTG-CACCG 136168 Query 112083 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 || ||||| ||||||| || | ||||| || ||||| ||||||||| | || ||| Sbjct 136169 CGCGCGCGACCTCTTCTATGCCATGTGGATCCCCGATCTGTTCATGAAGCGCGTCGAGTC 136228 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGG 112200 | || | ||| |||||||| || || | || || |||||| |||| ||| | || Sbjct 136229 CAACGGGGAGTGGAGCCTCTTTTGCCCGAACGAAGCCCCTGGTCTCGCCGACTGCTG-GG 136287 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGG 112260 | | ||||| ||||| || ||| | |||||||||| ||| |||| || || | || Sbjct 136288 GCGCCGAGTTCGAAGCGCTGTACGCCAAGTACGAGGCAGAGGGTCGCGCTC--GCAA-GG 136344 Query 112261 TG--CCAGCTGCCGATG---TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 | | || ||| | ||||| || || ||| | || || | ||||||||| || Sbjct 136345 TCATCAAG--GCCCAACAGCTGTGGTTTGCGATGCTCGATTCGCAGATCGAGACTGGCAC 136402 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || || ||||||||||| ||||| || || ||| || || |||| | ||| Sbjct 136403 GCCCTACATGCTTTACAAGGACGCGTGCAATTCCAAGTCGAACCAGCAGAACCTTGGTAC 136462 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435 ||||||||| ||||| || ||| || | || | || ||| || ||| || Sbjct 136463 GATCAAGAGCAGTAACCTTTGCTGCGAAGTCATCGAGTACACGAGCAAGGACGAGGTCGC 136522 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 112495 |||||| |||||||| || || || ||| |||||| ||| | ||| | | || Sbjct 136523 TGTGTGCAACCTCGCGTCCATTGCGCTCTCCAAGTTTGT-----TACTGACGGTGTC-TT 136576 Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 || | | | || |||||| | || || || | ||||| ||| | |||| || || Sbjct 136577 CGACTTTAAGAACCTCCACAAGGTCACCAAGATCGTCACCCGCAACTTGAACAAGGTGAT 136636 Query 112556 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 ||| || | ||||| | ||| || || || || ||| | ||||| || | Sbjct 136637 TGACGTCAACTACTACCCGATCGAGGAGGCGCGCAACAGCAACATGCGCCACCGCCCCGT 136696 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 112675 || |||||||||| || |||||||||| ||||| || || || | || || || Sbjct 136697 CGGCATCGGTGTCCAGGGCCTCGCGGATGCCTTCATCCTCATGGGCTACCCGTTCGAGTC 136756 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 ||| || ||| | |||| | || |||||||| || || |||||| || | || Sbjct 136757 GCCCGAGGCCAAGAAGCTCAACATCCAGATCTTTGAGACGATCTACCACGCCTCTATGGA 136816 Query 112736 G 112736 | Sbjct 136817 G 136817 >seq2528 Length=14935 Score = 100 bits (110), Expect = 4e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 102262 ||| || || || ||||||||||| ||||||||| | || | |||||||||||||| || Sbjct 5208 TGTCGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 5149 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||||||| || | |||| || || ||||| ||||| || ||||| || || ||| Sbjct 5148 TCTCATGCCGGGCTTGAGCTTTTCGAATGAGCTCATCTCGCGCGACGAAGGCCTTCAC 5091 >seq2543 Length=13544 Score = 82.4 bits (90), Expect = 9e-11 Identities = 185/271 (68%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 175994 GTAAAGATATACCTCGT--TTGAGACGCATCCTTACCACCCATGAGACGCGTACCAAACT 176051 || ||||| |||| || ||| | || || || || ||| || ||||||||||||| Sbjct 4841 GTGAAGATGTACCGCGGACTTGCGGCG--TCTTTGCCGCCCTGTAGTCGCGTACCAAACT 4784 Query 176052 GACCACACGGCT-CAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTG 176110 | || |||| | ||||| | || ||||| | || | |||||| | |||| ||| Sbjct 4783 GCCCCGACGGGTACAAGA-GCGGGAGGTTGTTGGCGCCAACGTAGTCTTGGGCCATGTTG 4725 Query 176111 ACAATCGTGTCCGCGAGA-GAGACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAA 176169 || || ||| | | | | || ||||||||||||||||||| | | ||| ||| | Sbjct 4724 ACGATTGTG-CTGTGCAACGACGCTTCACCGTGGTGGTACGCCGTATGCTCGGCGCAGTA 4666 Query 176170 TGCCGCCAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGGAAACATGCGTACAT 176229 |||| | |||||||||||| | ||| | | |||| ||| | ||| || || | | Sbjct 4665 GCCCGCGAGCTGCGCCACTTTGACCTCCTTCGTGAGCTTCCGTTTGAAGCACGCAAAGAG 4606 Query 176230 AACCTTGCGTTGCGAAGGCTTGAGACCATCC 176260 || || | || || |||||||| || ||| Sbjct 4605 CACTTTCCTCTGGGACGGCTTGAGTCCGTCC 4575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620718641084640