Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq400 223 4e-53 seq2528 116 4e-21 >seq400 Length=224259 Score = 223 bits (246), Expect = 4e-53 Identities = 740/1141 (65%), Gaps = 25/1141 (2%) Strand=Plus/Minus Query 110102 CATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAG 110161 ||||||| || ||||| ||||||| || | |||||| || |||||| | || | Sbjct 136725 CATCCGCGAGGCCCTGGACACCGATGCCGACGGGGCGGTGGCGCATGTTGCTGTTGCGCG 136666 Query 110162 CAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCT 110221 | || | ||||| ||||| ||| || ||| || | || || || ||| Sbjct 136665 CCTCCTCGATCGGGTAGTAGTTGACGTCAATCACCTTGTTCAAGTTGCGGGTGACGATCT 136606 Query 110222 TCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGG 110281 | |||| | ||||| || | | ||||| | |||| | | ||| | |||| Sbjct 136605 TGGTGACCTTGTGGAGGTTCTTAAAGTCGAA-GACACCGTC-----AGTAACAAACTTGG 136552 Query 110282 GGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAA 110341 ||| ||||| ||||| || |||||||||| |||||| ||| ||||| || | | Sbjct 136551 AGAGCGCAATGGACGCGAGGTTGCACACAGCGACCTCGTCCTTGCTCGTGTACTCGATGA 136492 Query 110342 TTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401 ||| || | ||| ||||| || ||| | ||||| ||| ||||| ||||| | Sbjct 136491 CTTCGCAGCAAAGGTTACTGCTCTTGATCGTACCAAGGTTCTGCTGGTTCGACTTGGAAT 136432 Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGG 110461 |||| || ||||| || |||||||| || || ||||| || |||| || | ||| || | Sbjct 136431 TGCACGCGTCCTTGTAAAGCATGTAGGGCGTGCCAGTCTCGATCTGCGAATCGAGCATCG 136372 Query 110462 CCTTCCATACATCGGCGGC---GGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACT 110518 | ||| | | ||| | ||| ||||| |||| |||| || ||||||||| Sbjct 136371 CAAACCACAGCTGTTGGGCCTTGATGACC-TTGCG--AGCGCGACCCTCTGCCTCGTACT 136315 Query 110519 TGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGG 110578 ||| ||||| | || || || || | || | ||||| || | || | Sbjct 136314 TGGCGTACAGCGCTTCGAACTCGGCGCCCCAGCAGTCGGCGAGACCAGGGGCTTCGTTCG 136255 Query 110579 GACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCC 110638 | || |||||| ||| | || ||| || | |||||||||||| || || |||| Sbjct 136254 GGCAAAAGAGGCTCCACTCCCCGTTGGACTCGACGCGCTTCATGAACAGATCGGGGATCC 136195 Query 110639 ACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCT 110698 |||| || |||| ||||| || || | ||| | || ||||| || | Sbjct 136194 ACATGGCATAGAAGAGGTCGCGCGCGCGGTGCAGTTCGTTGCCGTGGTTCTTCTTGAGGT 136135 Query 110699 CCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTAC 110758 | | || || | ||||||| |||||| || || || || | || | || ||||| | Sbjct 136134 CAAGGAACTCGAAAATATCCGCGTGCCACGGCTCAAGGTACATGGCAAAAGAGCCCTTCC 136075 Query 110759 GACGACC--CGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAA 110815 | ||| ||||| ||| || || || ||||| | ||||| || | ||||| |||| Sbjct 136074 GCTTACCACCGCCTTGGTCCACGTAACGCGCTGTATCGTTGAACACGCGAAGCATGGGAA 136015 Query 110816 TAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGT 110875 | || || | || || || || || | ||| | || | | |||||||| || Sbjct 136014 TGATACCGTTAGAGGAGCCGTTCGTGCCACGAATGTAGCTGTTGGTCGAACGAATGTTGT 135955 Query 110876 GGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTAC 110935 | || | | |||||| ||||| |||||||| ||| || |||| | || ||| Sbjct 135954 GAATGTTGACACCAATGCCACCGGCCCACTTGGAAATGCAGGCGCACTGCTTCAGCGTAT 135895 Query 110936 CATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAG 110995 | ||||| || ||||| || || | |||| | || ||||| || || | ||| | Sbjct 135894 CGTAAATGCCCTCAATTGAGTCGTCGCGCATGGCGAGAAGGAAGCACGACGAGAGCTGTG 135835 Query 110996 GACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA-CAGACCTTGGGAC 111054 |||||||||| || || |||||||| ||||| ||||| || |||| | | | || | Sbjct 135834 GACGAGGCGTACCGGCGTTGAAGAGAGTAGGCGTCGCGTGCGTGAAGTACAAC-TGACTC 135776 Query 111055 ATCTTGTTGTATGTGTCGAGTGCGG----AGGGTACATCTTTACCGTGAATACCAATGGC 111110 || | | ||| |||| ||| || | | || | ||| ||| ||||| | || Sbjct 135775 ATGTACTCGTACGTGTTGAGCGCCGCCTCAATGTCCTCCTT----GTGGATACCGACAGC 135720 Query 111111 AACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTA 111170 ||| ||||||| ||||| || || |||| | ||| ||| |||||| |||| || Sbjct 135719 AACACGCATGATCATATGCTGCGGGCGTTCGCACACCTTGTCATTGACACGCAGAAGATA 135660 Query 111171 ACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATCTGATTTGAT 111230 ||||| || || ||||||| |||||||| | | || || || || || || |||| Sbjct 135659 GCTCTTTTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCCGAAATGAT 135600 Query 111231 A 111231 | Sbjct 135599 A 135599 >seq2528 Length=14935 Score = 116 bits (128), Expect = 4e-21 Identities = 521/812 (64%), Gaps = 19/812 (2%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || || || | ||| |||||||| || ||||| || | ||| ||||| | ||||| Sbjct 4792 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATCATATCCATC 4851 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGA--TTGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 |||| || || || |||| || ||| ||||||| |||| || ||||| | Sbjct 4852 CAGTCGAATGGGTTCTTGGCGTGGAAGAGCTTGGTGGCG--CCAAGGGCGTTGAGAAGGC 4909 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATT-A 119384 | |||| | | ||||| |||| | |||| ||| ||||| || ||||| | | Sbjct 4910 GGTCGGCGCAGAATTCGATGTATTGGCACATGAGCGTCGAGTTCATGCCGATGAGTTCGA 4969 Query 119385 CACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 || ||||| | ||| | ||| | |||||||||||| || || || | ||| Sbjct 4970 CA-GGGAGCGATTCGGAAACGAACTGCTTCTCGATCTCGACGGCGTCACCGATGATCTCA 5028 Query 119445 TGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GCAAAT 119501 || || || | || | ||||| | ||| || | || | | || || Sbjct 5029 TGGATGCGCTCGTTTGAGAGCTTGTTGAT---GAGCTTCGAGTACATGAGGCAGGCGAAG 5085 Query 119502 TCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATG 119561 || ||||| ||||| || || |||||||||||||| |||| | || |||||| Sbjct 5086 TCGCAGTGAAGGCCTTCGTCGCGCGAGATGAGCTCATTCGAAAAGCTCAAGCCCGGCATG 5145 Query 119562 AGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCC 119621 || || | ||||| ||||| ||||||| || || ||||| ||||| ||||| || Sbjct 5146 AGACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTCG 5205 Query 119622 ACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGA--GACTTGTCGAACCACTTG 119678 ||| ||||| || | | || || || ||| ||| |||| | |||||||| Sbjct 5206 ACAGCAGCGAAGGCAACGATGCGTTCGGCGTAAGCAGCGATTTGGTTGTTGCACCACTTG 5265 Query 119679 AGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGC 119738 || ||||| | |||||| |||| | || |||| || | |||||| || | | Sbjct 5266 AGCGCCCACTGGGCCTTGCGCTGGACACACGGGATCGTGTCGATGGCGCGGAGCACGCGG 5325 Query 119739 TTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGA 119798 | ||| ||| | ||||| || || | ||||| ||| |||||| || || Sbjct 5326 TCCTTCTCAACCGTGTCCTTGATGTACGTGTCAATAAGTAGCGAGTAGACTTCGGAGTGG 5385 Query 119799 ACCATTTCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC 119857 | ||||| | | || |||| || |||| || | |||||||| | | || ||||| Sbjct 5386 ATGTTTTCAAT-AGCGATCTGAAAGCCATAGAAGCAACGAGCTTCAGGCACCTGAACTTC 5444 Query 119858 GTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGC 119917 || | || || || | || ||| ||||| || || || | |||||||| || Sbjct 5445 GTTGGAGAAGTTCATGGCCAAGTTCTCATTTACAATGCCGTCAGACGCGGCGAAGAACGC 5504 Query 119918 TAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATC 119977 | | || | | ||||| | || || || |||| | | |||||| | || ||| Sbjct 5505 AAGCACGTGCGTGATGAAGAAGCGCTCGTTGTCCGTGAGCTTCTCCCAGTCCTTCAGATC 5564 Query 119978 TTTAGACAAG-TCCACCTCTTCAGCTGTCCAG 120008 | ||| || || | ||||| ||||||||| Sbjct 5565 -GTGGACGAGATCGAGTTCTTCGGCTGTCCAG 5595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588953456943600