Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq400 264 1e-65 seq2528 104 3e-17 seq2845 89.7 6e-13 seq2543 87.8 2e-12 >seq400 Length=224259 Score = 264 bits (292), Expect = 1e-65 Identities = 802/1222 (66%), Gaps = 29/1222 (2%) Strand=Plus/Minus Query 106186 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 106245 ||||| || ||||| || || || |||||||| | || | || |||||| || Sbjct 136817 CTCCATAGAGGCGTGGTAGATCGTCTCAAAGATCTGGATGTTGAGCTTCTTGGCCTCGGG 136758 Query 106246 TGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 106305 || || || | ||||| | || || |||||||||| || || ||||| | || Sbjct 136757 CGACTCGAACGGGTAGCCCATGAGGATGAAGGCATCCGCGAGGCCCTGGACACCGATGCC 136698 Query 106306 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 106365 | || | ||| ||||| || || ||||| ||| | || || | || ||| Sbjct 136697 GACGGGGCGGTGGCGCATGTTGCTGTTGCGCGCCTCCTCGATCGGGTAGTAGTTGACGTC 136638 Query 106366 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 106425 ||| || ||| | || ||| || ||||| |||| | || || || | | | || Sbjct 136637 AATCACCTTGTTCAAGTTGCGGGTGACGATCTTGGTGACCTTGTGGAGGTTCTTAAAGTC 136578 Query 106426 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 106485 || || | | ||| | ||| |||| | || || || || || | ||||| || Sbjct 136577 GAA-----GACAC-CGTCAGTAACAAACTTGGAGAGCGCAATGGACGCGAGGTTGCACAC 136524 Query 106486 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAAT 106545 ||| ||| ||||| |||||||| | | ||| || | ||| ||||| || Sbjct 136523 AGCGACCTCGTCCTTGCTCGTGTACTCGATGACTTCGCAGCAAAGGTTACTGCTCTTGAT 136464 Query 106546 CGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 106605 ||| || | |||| ||||| ||| |||||||| |||||||| ||||||||||| Sbjct 136463 CGTACCAAGGTTCTGCTGGTTCGACTTGGAATTGCACGCGTCCTTGTAAAGCATGTAGGG 136404 Query 106606 CGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTAC--A 106663 ||| || ||||| |||| || | ||| || || ||||| || | ||| | Sbjct 136403 CGTGCCAGTCTCGATCTGCGAATCGAGCATCGCAAACCACA-----GCTGTTGGGCCTTG 136349 Query 106664 ATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 106720 ||| | ||| || || ||||| ||||||||||| | ||| || ||||| ||||| | Sbjct 136348 ATGACCTTGCGAGCGCGACCCTCTGCCTCGTACTTGGCGTACAGCGCTTCGAACTCGGCG 136289 Query 106721 CCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 106779 ||| | || ||||| |||||| || || | || || || || || ||| | || Sbjct 136288 CCC-CAGCAGTCGGCGAGACCAGGGGCTTCGTTCGGGCAAAAGAGGCTCCACTCCCCGTT 136230 Query 106780 CTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 106839 ||| || ||||||||||| || || || ||||||| || | ||||| || | Sbjct 136229 GGACTCGACGCGCTTCATGAACAGATCGGGGATCCACATGGCATAGAAGAGGTCGCGCGC 136170 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGT 106898 || | ||||| || ||||| || | | ||||||||||| | |||||||||| Sbjct 136169 GCGGTGCAGTTCGTTGCCGTGGTT-CTTCTTGAGGTCAAGGAACTCGAAAATATCCGCGT 136111 Query 106899 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACAT 106955 |||| |||||||| || | || | ||| ||||| || || || |||| | || | Sbjct 136110 GCCACGGCTCAAGGTACATGGCAAAAGAGCCCTTCCGCTTACCACCGCCTTGGTCCACGT 136051 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 | |||||||| |||| || ||||||||||| ||||| ||||| | || || || | Sbjct 136050 AACGCGCTGTATCGTTGAACACGCGAAGCATGGGAATGATACCGTTAGAGGAGCCGTTCG 135991 Query 107016 TCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 107074 | || ||||| || | || | | | | | || |||| | ||||| || || Sbjct 135990 TGCCACGAAT-GTAGCTGTTGGTCGAACGAATGTTGTGAATGTTGACACCAATGCCACCG 135932 Query 107075 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 107134 |||||||| || || || |||| | | || || | || || || | |||||||| Sbjct 135931 GCCCACTTGGAAATGCAGGCGCACTGCTTCAGCGTATCGTAAATGCCCTCAATTGAGTCG 135872 Query 107135 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAG 107194 || |||||| ||||||||| || | ||| || | || ||||| || |||||| Sbjct 135871 TCGCGCATGGCGAGAAGGAAGCACGACGAGAGCTGTGGACGAGGCGTACCGGCGTTGAAG 135812 Query 107195 AGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAAGAC 107253 || || || || ||||| |||| ||| || ||| | ||||| || | | | Sbjct 135811 AGAGTAGGCGTCGCGTGCGTGAA-GTACAACTGACTCATGTACTCGTACGTGTTGAGCGC 135753 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTG-GGGTG 107312 | |||||||| ||| |||||| |||| || |||||||| | ||| | || ||| | Sbjct 135752 CGCCTCAATGTCCTCCTTGTGGATACCGACAGCAACACGCATGATCATATGCTGCGGGCG 135693 Query 107313 TTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAA 107372 || || | || ||| || || ||||||||||||| || || || |||| |||| Sbjct 135692 TTCGCA-CACCTTGTCATTGACACGCAGAAGATAGCTCTTTTCGAGCGTCTTGAAGCCAA 135634 Query 107373 AGTAACCAAAATCATAGTCCCG 107394 |||| | | ||| |||| || Sbjct 135633 AGTAGTCGTACTCAAAGTCGCG 135612 >seq2528 Length=14935 Score = 104 bits (114), Expect = 3e-17 Identities = 305/459 (66%), Gaps = 11/459 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | ||| || | ||||| Sbjct 4792 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATCATATCCATC 4851 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||| ||||| ||||| |||| | | | |||||| || || ||||| || | Sbjct 4852 CAGTCGAATGGGTTCTTGGCGTGGAAGAGCTTGGTGGCGCC--AAGGGCGTTGAGAAGGC 4909 Query 117104 GATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT- 117161 | || | || | | || ||||| | | |||| | |||||||| |||||||| | Sbjct 4910 GGTCGGCGCAGA-ATTCGATGTATTGGCACATGAGCGTCGAGTTCATGCCGATGAGTTCG 4968 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 117221 ||| ||||| | || | | |||| ||||| ||||| || || || | ||| | Sbjct 4969 ACA-GGGAGCGATTCGGAAACGAACTGCTTCTCGATCTCGACGGCGTCACCGATGATCTC 5027 Query 117222 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACT 117280 ||||| ||| | | | | | || | || | | | | || ||| || | Sbjct 5028 ATGGATGCGCTCGTTTGAGAGCTTGTTGATGAGCTTCGAGTACATGAGGCA-GGCGAAGT 5086 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| || || || || || || || || ||||| || |||| | ||| ||||||| Sbjct 5087 CGCAGTGAAGGCCTTCGTCGCGCGAGATGAGCTCATTCGAAAAGCTCAAGCCCGGCATGA 5146 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 |||| |||||||| | ||| | || | |||||| || || |||||||| || || || | Sbjct 5147 GACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTCGA 5206 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCG-AAGGAGCGA 117438 || || || |||| | ||| |||||| ||| ||||| Sbjct 5207 CAGCAGCGAAGGCAACGATGCGTTCGGCGTAAGCAGCGA 5245 >seq2845 Length=3788 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 136159 TAAAAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTC 136218 ||| ||||| ||| ||||| |||| | |||| ||||||||||||||| | | || ||||| Sbjct 297 TAACAGCTCCTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTC 356 Query 136219 AAATCCAGGTAGGAGCTTT 136237 |||||| |||||||||||| Sbjct 357 AAATCCCGGTAGGAGCTTT 375 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 136159 TAAAAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTC 136218 |||| |||| ||| ||||| |||| | |||| ||||||||||||||| | | || ||||| Sbjct 2643 TAAACGCTCCTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTC 2584 Query 136219 AAATCCAGGTAGGAGCTTT 136237 |||||| |||||||||||| Sbjct 2583 AAATCCCGGTAGGAGCTTT 2565 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| ||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 3098 GCTCCTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 3039 Query 136224 CAGGTAGGAGCTTT 136237 | |||||||||||| Sbjct 3038 CCGGTAGGAGCTTT 3025 >seq2543 Length=13544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 184/269 (68%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 168444 GTGAAAATGTACCTCGTCTGAGAAGCATCCTTACCACCCATGAGACGCGTACCAAATTGA 168503 ||||| ||||||| || | || || || || ||| || ||||||||||| || Sbjct 4841 GTGAAGATGTACCGCGGACTTGCGGCGTCTTTGCCGCCCTGTAGTCGCGTACCAAACTGC 4782 Query 168504 CCACACGGTT-CAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAAC 168562 || |||| | ||||| | | |||||| | || |||||| | |||| || || Sbjct 4781 CCCGACGGGTACAAGAGCGGGAG-GTTGTTGGCGCCAACGTAGTCTTGGGCCATGTTGAC 4723 Query 168563 AATCGTG-TCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTTGTCCGCGACATATG 168621 || ||| | || || || ||||||| ||||||||||| | | || ||| || Sbjct 4722 GATTGTGCTGTGC-AACGACGCTTCACCGTGGTGGTACGCCGTATGCTCGGCGCAGTAGC 4664 Query 168622 CCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCA 168681 |||| || || ||||| || | || | | |||| ||| | |||||| ||| | | || Sbjct 4663 CCGCGAGCTGCGCCACTTTGACCTCCTTCGTGAGCTTCCGTTTGAAGCACGCAAAGAGCA 4604 Query 168682 CTTTCCTCTGTGAAGGCTTGAGACCATCC 168710 |||||||||| || |||||||| || ||| Sbjct 4603 CTTTCCTCTGGGACGGCTTGAGTCCGTCC 4575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589958218484880