Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2606 114 8e-21 seq1051 111 1e-19 seq880 111 1e-19 seq1567 102 5e-17 seq389 93.3 3e-14 >seq2606 Length=15791 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || | || || ||||| || ||||| || Sbjct 3560 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAG 3501 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||||| |||||| Sbjct 3500 ATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG 3441 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || |||| || ||||| || ||||| | |||||| || Sbjct 3440 TCGATCGAGTCCGAAGGCTCGACGTCGAGCGTGATGGTCTTACCCGTCAAAGTCTTGACG 3381 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3380 AAGATCTGCAT 3370 >seq1051 Length=134064 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || | || || ||||| || ||||| || Sbjct 120148 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 120089 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||||| || ||| Sbjct 120088 ATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 120029 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || || | ||| ||||||| ||| ||||| || ||||| || ||||| || Sbjct 120028 TCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACG 119969 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 119968 AAGATCTGCAT 119958 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || | || || ||||| || ||||| || Sbjct 119920 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 119861 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||||| || ||| Sbjct 119860 ATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 119801 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || || | ||| ||||||| ||| ||||| || ||||| || ||||| || Sbjct 119800 TCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACG 119741 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 119740 AAGATTTGCAT 119730 >seq880 Length=46309 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || | || || ||||| || ||||| || Sbjct 27044 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 27103 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||||| |||||| Sbjct 27104 ATGAGGCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG 27163 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || || ||| || |||| || ||||| || ||||| | ||||| || Sbjct 27164 TCAATCGAGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACG 27223 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 27224 AAGATCTGCAT 27234 >seq1567 Length=70164 Score = 102 bits (112), Expect = 5e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || |||| || ||||| || ||||| || Sbjct 49836 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 49895 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||||| |||||| Sbjct 49896 ATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG 49955 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || || |||||| |||| || ||||| || || || | |||||| || Sbjct 49956 TCGATCGAGTCCGAGGGCTCAACGTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTGACG 50015 Query 34971 AAGATCTGCATATT 34984 || ||||||||||| Sbjct 50016 AAAATCTGCATATT 50029 >seq389 Length=167588 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || |||||||| Sbjct 110357 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAG 110416 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| |||||| Sbjct 110417 ATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG 110476 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || |||| || || || || || ||||| ||||| || Sbjct 110477 TCAATCGAGTCGGACGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTGACG 110536 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 110537 AAGATTTGCAT 110547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324621485282736