Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2528 163 5e-35 seq400 125 1e-23 >seq2528 Length=14935 Score = 163 bits (180), Expect = 5e-35 Identities = 559/860 (65%), Gaps = 33/860 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAA---AACTCAAACTGGACCGCCGAAGAGATT 25530 ||| | ||||| |||||||||||||| | | || |||||| |||||||| | Sbjct 5633 GATGTGTGGGAAATGTACAAGAAGGCCGAGGCGAGCTT---CTGGACAGCCGAAGAACTC 5577 Query 25531 GATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTC-T 25589 ||||| | | | || || | | |||| | || | | |||||| || | ||| | Sbjct 5576 GATCTCGTCCACGATCTGAAGGACTGGGAGAAGCTCACGGACAACGAGC-GCTTCTTCAT 5518 Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 || | ||||| | || ||||| || || ||||| || || || || ||||| || | Sbjct 5517 CACGCACGTGCTTGCGTTCTTCGCCGCGTCTGACGGCATTGTAAATGAGAACTTGGCCAT 5458 Query 25650 GAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 || ||| ||| ||||| ||| | | || || | || ||||| || || ||||| | Sbjct 5457 GAACTTCTCCAACGAAGTTCAGGTGCCTGAAGCTCGT-TGCTTCTATGGCTTTCAGATCG 5399 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAG 25765 | || ||||| | ||||| || || || | ||| || || |||||||| | | Sbjct 5398 CTATTGAAAACATCCACTCCGAAGTCTACTC---GCTACTTATTGACACGTACATCAAGG 5342 Query 25766 ACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGG 25824 || | |||| || || || | | |||||||| ||| || || | || || | Sbjct 5341 ACACGGTTGAGAAGGACCGCGTGCTCCGCGCCATCGA-CACGATCCCGTGTGTCCAGCGC 5283 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTG 25884 ||||| | |||||| | |||||| ||||| ||| | |||| | | | ||| || | Sbjct 5282 AAGGCCCAGTGGGCGCTCAAGTGGTGCAACAACCAAATCGCTGCTTACGCCGAACGCATC 5223 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTG 25943 || ||||| |||||||| || ||||| || ||| || || || ||| |||||||||| Sbjct 5222 GTTGCCTTCGCTGCTGTCGAAGGCATTTTCTTCTCTGGCTCCTTCTGCT-CCATCTTCTG 5164 Query 25944 GCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 ||||||| || || |||||| || || |||||| || ||||||||| | || Sbjct 5163 GCTCAAGAAGCGCGGTCTCATGCCGGGCTTGAGCTTTTCGAATGAGCTCATCTCGCGCGA 5104 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063 ||| || || ||| | || || |||||||| | ||| || | | || |||| | Sbjct 5103 CGAAGGCCTTCACTGCGACTTCGCCTGCCTCATGTACTCG---AAGCTCATCAACAAGC- 5048 Query 26064 TTCTCAA--GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 |||||| ||| | || | |||||| || || || |||||||||||| |||| Sbjct 5047 -TCTCAAACGAGCGCATCCATGAGATCATCGGTGACGCCGTCGAGATCGAGAAGCAGTTC 4989 Query 26122 CNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATAC 26181 | ||||||||| | |||||| |||||||| Sbjct 4988 GTTTCCGAATCGCTCCCTGTCGAACTCATCGGCATGAACTCGACGCTCATGTGCCAATAC 4929 Query 26182 ATTGAGTATGTG-GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTAC 26240 || || | | || ||||||| || || | || || | ||| |||| | || Sbjct 4928 ATCGAAT-TCTGCGCCGACCGCCTTCTCAACGCCCTTGGCGCCACCAAGCTCTTC--CAC 4872 Query 26241 GCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 ||| ||||| ||||||| ||||| | || || | | || |||||||||||||| Sbjct 4871 GCCAAGAACCCATTCGACTGGATGGATATGATCTCCCTCCAGGGCAAGACCAACTTCTTC 4812 Query 26299 GAAAAGAGGGTCGGCGACTA 26318 || ||| | |||||||| || Sbjct 4811 GAGAAGCGCGTCGGCGAGTA 4792 >seq400 Length=224259 Score = 125 bits (138), Expect = 1e-23 Identities = 547/855 (64%), Gaps = 29/855 (3%) Strand=Plus/Minus Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAG 221485 ||||||||||| |||||||||||| ||||||| ||||||||||||| || ||| Sbjct 136807 GCGTGGTAGATCGTCTCAAAGATCTGGATGTTGAGCTTCTTGGCCTCGGGCGACTCGAAC 136748 Query 221486 GGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTG 221545 || | || | ||| | || || || ||||| || ||||| |||| ||| | | Sbjct 136747 GGGTAGCCCATGAGGATGAAGGCATCCGCGAGGCCCTGGACACCGATGCCGACGGGGCGG 136688 Query 221546 TGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGAT 221603 || | | ||||| | ||| | || || | |||| || |||||||||| |||| | Sbjct 136687 TGGCGCATGTTGCTGTTGCGCGC-CTCCTCGATCGGG-TAGTAGTTGACGTCAATCACCT 136630 Query 221604 TGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCA 221663 |||| | ||| | |||| || || |||| | || |||| | || | | Sbjct 136629 TGTTCAAGTTGCGGGTGACGATCTTGGTGACCTTGTGGAGGTTCT------TAAAGTCGA 136576 Query 221664 ACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTAC 221723 | | | ||||| || ||||| | || |||| | || ||||| | Sbjct 136575 A---GACACCGTCA-------GTA--ACAAACTTGGAGAGCGCAATGGACGCGAGGTTGC 136528 Query 221724 ACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACT 221783 |||| || |||||||||||| | || |||| |||| || || ||||| |||| || Sbjct 136527 ACACAGCGACCTCGTCCTTGCTCGTGTACTCGATGACTTCGCAGCAAAGGTTACTGCTCT 136468 Query 221784 TGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAA 221843 |||| || || |||| | || || |||||| |||| ||||||||||| ||||| Sbjct 136467 TGATCGTACCAAGGTTCTGCTGGTTCGACTTGGAATTGCACGCGTCCTTGTAAAGCATGT 136408 Query 221844 AGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCA 221903 |||| ||||||||| | ||| | | || ||| ||| || | | ||| || Sbjct 136407 AGGGCGTGCCAGTCTCGATCTGCGAATCGAGCATCGCAAACCACAGCTGT-TGGGCCTTG 136349 Query 221904 CCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTT 221962 | ||| || || |||||| | | || ||| || || ||| || |||| Sbjct 136348 ATGACCTTGCGAGCGCGACCCTCTGCC---TCGTACTTGGCGTACAGCGCTTCGAACTCG 136292 Query 221963 TCACCGTACGCCTCGTCCAGGCC-TGGACACCTGGCGGGACACATCAGACTCCAGTGCTT 222021 | || | ||| | || || || | | |||| || | || ||||| | | Sbjct 136291 GCGCCCCAGCAGTCGGCGAGACCAGGGGCTTCGTTCGGG-CAAAAGAGGCTCCACTCCCC 136233 Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCT 222081 |||| | ||| | || |||||| || || |||||||||| || | ||||| || | Sbjct 136232 GTTGGACTCGACGCGCTTCATGAACAGATCGGGGATCCACATGGCATAGAAGAGGTCGCG 136173 Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGC 222141 | || ||| || ||||| ||| ||| | || || | ||||| ||||| || || Sbjct 136172 CGCGCGGTGCAGTTCGTTGCCGTGGTTCTTCTTGAGGTCAAGGAACTCGAAAATATCCGC 136113 Query 222142 GTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||||||||||| || || | ||| | || ||| ||||| || || || ||||| Sbjct 136112 GTGCCACGGCTCAAGGTACATGGCAAAAGAGCCCTTCCGCTTACCACCGCCTTGGTCCAC 136053 Query 222202 CATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTT 222261 | | | | ||||||| | |||||| | || | | ||||| || ||||| Sbjct 136052 GTAACGCGCTGTATCGTTGAACACGCGAAGCATGGGAATGATACCGTTAGAGGAGCCGTT 135993 Query 222262 GGTGCCCTTAATGTA 222276 ||||| |||||| Sbjct 135992 CGTGCCACGAATGTA 135978 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 221110 GTGCTTGTTCACCACTTGGAAAT-CTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAG 221168 || |||||| || | | | |||| | |||| ||||| | || | ||||| ||| || | Sbjct 137114 GTACTTGTTGACGA-TCGTAAATTCGCCCGCAAGCACGCGCCGCGAGTACATGTTGGACG 137056 Query 221169 TGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGG 221228 |||| || |||||| ||||||||||| |||||||| || || || |||||||| | Sbjct 137055 TGAATGGCTCGATGGATTCGTTGTTGCCGAGGATCTGGGCTGTCGATGCCGTGGGCATCG 136996 Query 221229 GTGCCACCAGCAGACTGTTGCGCA 221252 | |||| ||| ||| |||||||| Sbjct 136995 GCGCCAGCAGTAGAGAGTTGCGCA 136972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928809248465280