Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq400 228 1e-54 seq2528 104 3e-17 seq2543 87.8 2e-12 >seq400 Length=224259 Score = 228 bits (252), Expect = 1e-54 Identities = 992/1541 (64%), Gaps = 41/1541 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | |||||||| |||| || || || ||||||||||||| || Sbjct 135612 CGCGACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAAAAGAGCTATCTTCTGCGT 135671 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || ||| || | ||| ||| ||| | ||| ||||||| || || |||| ||| Sbjct 135672 GTCAATGACAAGGTGTGCGAACGCCCGCAGCATATGATCATGCGTGTTGCTGTCGGTATC 135731 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTT 75306 ||| ||| |||||||| | | | | || ||||| | ||| || ||| || Sbjct 135732 CACAAGGAGGACATTGAGGCGGCGCTCAACACGTACGAGTACATGAGTCAGTTGTA-CTT 135790 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTG 75366 || ||||| || || || |||||||| || ||||| || | || ||| | || || Sbjct 135791 CACGCACGCGACGCCTACTCTCTTCAACGCCGGTACGCCTCGTCCACAGCTCTCGTCGTG 135850 Query 75367 CTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTG 75426 ||||||| |||||| || |||||||| | || || || | || || | | |||| Sbjct 135851 CTTCCTTCTCGCCATGCGCGACGACTCAATTGAGGGCATTTACGATACGCTGAAGCAGTG 135910 Query 75427 TGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAA 75486 || || || |||||||| || || ||||| | |||| || | | | | | Sbjct 135911 CGCCTGCATTTCCAAGTGGGCCGGTGGCATTGGTGTCAACATTCACAACATTCGTTCGAC 135970 Query 75487 TAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 || | || ||||| || || || || || | ||||| ||||| |||||||||| Sbjct 135971 CAACAGCT-ACATTCGTGGCACGAACGGCTCCTCTAACGGTATCATTCCCATGCTTCGCG 136029 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCG 75602 | || |||| |||||||| || || | |||| || || || ||||| || | | Sbjct 136030 TGTTCAACGATACAGCGCGTTACGTGGACCAAGGCGGTGGTAAGCGGAAGGGCTCTTTTG 136089 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAAC 75661 | | ||| | || || ||||| || ||||| | ||||||||||| | | || ||| Sbjct 136090 CCATGTACCTTGAGCCGTGGCACGCGGATATTTTCGAGTTCCTTGACCTCAAGA-AGAAC 136148 Query 75662 CAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTT 75721 || || ||||| | || | || ||||| | || ||||||| || || || Sbjct 136149 CACGGCAACGAACTGCACCGCGCGCGCGACCTCTTCTATGCCATGTGGATCCCCGATCTG 136208 Query 75722 TTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCA 75781 ||||||||||| || ||| || | ||| || || || || || | || || Sbjct 136209 TTCATGAAGCGCGTCGAGTCCAACGGGGAGTGGAGCCTCTTTTGCCCGAACGAAGCCCCT 136268 Query 75782 GGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGA 75840 |||||| ||||| || | ||| | ||||| ||||| || ||| | ||||| || | || Sbjct 136269 GGTCTCGCCGACTGCTG-GGGCGCCGAGTTCGAAGCGCTGTACGCCAAGTACGAGGCAGA 136327 Query 75841 GGGTAGAGC---CAATGCGA--CTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAA 75895 |||| | || ||| | | | ||| | || | |||| || || ||| | Sbjct 136328 GGGTCGCGCTCGCAAGGTCATCAAGGCCCAACAGCTGTGGTTT-----GCGATGCTCGAT 136382 Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || |||| |||||||| || || || |||||||||||||| || || || ||| Sbjct 136383 TCGCAGATCGAGACTGGCACGCCCTACATGCTTTACAAGGACGCGTGCAATTCCAAGTCG 136442 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| | || || ||||||||| || |||||| ||| | | |||||| Sbjct 136443 AACCAGCAGAACCTTGGTACGATCAAGAGCAGTAACCTTTGCTGCGAAGTCATCGAGTAC 136502 Query 76016 ACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC 76075 || ||||| ||| ||||| ||||| | || || || || || | |||| ||| Sbjct 136503 ACGAGCAAGGACGAGGTCGCTGTGTGCAACCTCGCGTCCATTGCGCTCTCCAAGTTTGTT 136562 Query 76076 AATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACC 76135 | ||| | | || || || | | | || || || | |||| ||||| || ||| Sbjct 136563 ACTGACG-GTGTC-----TTCGACTTTAAGAACCTCCACAAGGTCACCAAGATCGTCACC 136616 Query 76136 AAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCT 76195 || | ||| || |||||| || | || || | ||| ||||| || Sbjct 136617 CGCAACTTGAACAAGGTGATTGACGTCAACTACTACCCGATCGAGGAGGCGCGCAACAGC 136676 Query 76196 AATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG 76255 || ||||| ||| | || | || | ||||| || || |||||||||| || || | Sbjct 136677 AACATGCGCCACCGCCCCGTCGGCATCGGTGTCCAGGGCCTCGCGGATGCCTTCATCCTC 136736 Query 76256 TGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACC 76315 ||||| | || || || || |||||| || | || | |||||||| || Sbjct 136737 ATGGGCTACCCGTTCGAGTCGCCCGAGGCCAAGAAGCTCAACATCCAGATCTTTGAGACG 136796 Query 76316 ATGTATCACGCATCCCTGGAGGC-GAGTTGTGAATTGGCTGAAGC-CCAAGGTTCCTATG 76373 || || ||||| || ||||| | | || || | || |||| | || |||| | Sbjct 136797 ATCTACCACGCCTCTATGGAGACTTCGATG-GAGCTCGC-CAAGCAGCTCGGCCCCTACG 136854 Query 76374 AGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT-CAGTTTGATATGTGGGAAGGT 76432 |||| | || || |||| |||| |||| |||| |||| || ||||||| || Sbjct 136855 AGACGTACTCCGGGTCGCCCGTCTCCC-AGGGCCGCTTCCAGTACGACATGTGGG-GTGT 136912 Query 76433 GAAACCAA--GCTCAACTACGACTGGGATGTTCTCAAGGAACGCA--TCAAGGAGAAGGG 76488 || || | | || || ||||||| ||||||| |||| | | | || Sbjct 136913 GACGCCGACTGATC-TCTGGGACTGGGCGACGCTCAAGG--CGCAGGTGGCTGCTCATGG 136969 Query 76489 TCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 76548 | || ||| ||| || |||| || ||||| || || || || || || ||| | || Sbjct 136970 CGTGCGCAACTCTCTACTGCTGGCGCCGATGCCCACGGCATCGACAGCCCAGATCCTCGG 137029 Query 76549 TAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGG 76608 || || |||| | | || |||| ||| | ||||| ||| | | | || || || Sbjct 137030 CAACAACGAATCCATCGAGCCATTCACGTCCAACATGTACTCGCGGCGCGTGCTTGCGGG 137089 Query 76609 TGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCA 76649 || ||| || ||||||||| ||||| | || || |||| Sbjct 137090 CGAATTTACGATCGTCAACAAGTACCTCATGAAGGAACTCA 137130 >seq2528 Length=14935 Score = 104 bits (114), Expect = 3e-17 Identities = 305/459 (66%), Gaps = 11/459 (2%) Strand=Plus/Minus Query 65064 TCGCTCCTT-CGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCG 65122 ||||| ||| |||||| ||| | |||| || || ||| || || || |||||||| | Sbjct 5245 TCGCTGCTTACGCCGAACGCATCGTTGCCTTCGCTGCTGTCGAAGGCATTTTCTTCTCTG 5186 Query 65123 GGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCT 65182 | || |||||| | || | ||| | |||||||| ||||||||||| ||| | |||| | Sbjct 5185 GCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGCTTGAGCTTTT 5126 Query 65183 CAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGC-TCTTC 65241 | ||||| || || || || || || || || ||| || || ||| || | | | | Sbjct 5125 CGAATGAGCTCATCTCGCGCGACGAAGGCCTTCACTGCGACTTCGCC-TGCCTCATGTAC 5067 Query 65242 AAGACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTT 65301 || | || | | | | | ||| ||||| | ||| | || || || Sbjct 5066 TCGAAGCTCATCAACAAGCTCTCAAACGAGCGCATCCATGAGATCATCGGTGACGCCGTC 5007 Query 65302 GAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTC 65360 ||||| ||||| |||| | | || | ||||| ||| | |||||||| |||||||| Sbjct 5006 GAGATCGAGAAGCAGTTCGTTTCCGAATCGCTCCC-TGTCGAACTCATCGGCATGAACTC 4948 Query 65361 TGAGAAGATGTCCGAGTACATTGAGTATGTG-TCGGATCGTCTCCTCAAACAAGTTGGGG 65419 | |||| | | ||||| || | | || | || || || ||||| || || Sbjct 4947 GACGCTCATGTGCCAATACATCGAAT-TCTGCGCCGACCGCCTTCTCAACGCCCTT--GG 4891 Query 65420 TGCCACCCA--TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGA 65477 |||||| | | | |||| ||||| ||||| |||| ||||| | || ||| | Sbjct 4890 CGCCACCAAGCTCTTCCACGCCAAGAACCCATTCGACTGGATGGATATGATCTCCCTCCA 4831 Query 65478 TGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||||||||| |||||||| || || || || Sbjct 4830 GGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 4792 >seq2543 Length=13544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 184/269 (68%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 14362 GGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAA 14421 ||| || |||||||| || |||||||||||| | | ||| |||||| | ||| |||| Sbjct 4575 GGACGGACTCAAGCCGTCCCAGAGGAAAGTGCTCTTTGCGTGCTTCAAACGGAAGCTCAC 4634 Query 14422 GGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCA 14481 | | || | || ||||| || || |||| || ||| || | | ||||||||||| Sbjct 4635 GAAGGAGGTCAAAGTGGCGCAGCTCGCGGGCTACTGCGCCGAGCATACGGCGTACCACCA 4694 Query 14482 TGGTGAAGTATCCTTAGCGGA-CACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAA 14540 ||||||| || || || | ||| || || || |||| | |||||| || | | Sbjct 4695 CGGTGAAGCGTCGTT-GCACAGCACAATCGTCAACATGGCCCAAGACTACGTTGGCGCCA 4753 Query 14541 ACAACATTAACCTTCTTG-AACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAG 14599 ||||| | | ||||| | |||| || || ||||||||||| || ||| || || Sbjct 4754 ACAAC-CTCCCGCTCTTGTACCCGTCGGGGCAGTTTGGTACGCGACTACAGGGCGGCAAA 4812 Query 14600 GATGCTTCTCAGACGAGGTACATTTTCAC 14628 || || | || ||||||| ||||| Sbjct 4813 GACGCCGCAAGTCCGCGGTACATCTTCAC 4841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596546766298560