Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq400 132 4e-26 seq880 100 3e-16 seq389 100 3e-16 seq2606 96.9 3e-15 seq1051 96.9 3e-15 >seq400 Length=224259 Score = 132 bits (146), Expect = 4e-26 Identities = 402/612 (66%), Gaps = 17/612 (3%) Strand=Plus/Minus Query 139390 CCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCG 139449 ||||| | || ||||||| ||||||||||||| || ||||||| || | | | ||| Sbjct 136234 CCGTTGGACTCGACGCGCTTCATGAACAGATCGGGGATCCACATGGCATAGAAGAGGTCG 136175 Query 139450 CGCGCCTTCTTATCTTCCGAACCCATGTTACGT-TTCATGTTAAGGAAATCAAAAACGTC 139508 ||||| | ||| | || || | | | || | || |||||| || |||| || Sbjct 136174 CGCGCGCGGTGCAGTTC-GTTGCCGTGGTTCTTCTTGAGGTCAAGGAACTCGAAAATATC 136116 Query 139509 AGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACC---TTGATC 139565 |||||||| || || || || ||||| | | ||| ||||| || ||||| ||| || Sbjct 136115 CGCGTGCCACGGCTCAAGGTACATGGCAAAAGAGCCCTTCCGCTTACCACCGCCTTGGTC 136056 Query 139566 GACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCC 139625 |||| || | | || ||||| ||||| | ||| || | |||| | | | || Sbjct 136055 CACGTAACGCGCTGTATCGTTGAACACGCGAAGCATGGGAATGATACCGTTAGAGGAGCC 135996 Query 139626 GTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCC 139685 ||| |||| ||| ||| |||||| | || | || || | |||| || || || Sbjct 135995 GTTCGTGCCACGAATGTAGCTGTTGGTCGAACGAATGTTGTGAATGTTGACACCAATGCC 135936 Query 139686 GCCGCCAAATTTGGATATTAAAACGCAATCGCGTAAT-GTCTCGTATATACCTCTTATGC 139744 ||| | | ||||| || | |||| | || | | || ||||| || || || Sbjct 135935 ACCGGCCCACTTGGAAATGCAGGCGCACT-GCTTCAGCGTATCGTAAATGCCCTCAATTG 135877 Query 139745 TGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTG 139804 |||||| |||| | || || ||||| ||||| || || || | ||| ||||| Sbjct 135876 AGTCGTCGCGCATGGCGAGAAGGAAGCACGACGAGAGCTGTGGACGAGGCGTACCGGCGT 135817 Query 139805 CAAACAGAGTAGGACTCGCGTGCGTGA---ACATTTGTTTCGACATCAATTCGTACGTTT 139861 || |||||||| |||||||||||| ||| || | ||| | |||||||| | Sbjct 135816 TGAAGAGAGTAGGCGTCGCGTGCGTGAAGTACAACTGACT---CATGTACTCGTACGTGT 135760 Query 139862 CGATGGCGCTCACAATATC--CCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATG 139919 || || | |||| || |||| |||||||||||||| || ||||| | |||||| Sbjct 135759 TGAGCGCCGCCTCAATGTCCTCCTT--GTGGATACCGACAGCAACACGCATGATCATATG 135702 Query 139920 TTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTT 139979 || |||||| |||| | | | || ||||| | || || || ||||| Sbjct 135701 CTGCGGGCGTTCGCACACCTTGTCATTGACACGCAGAAGATAGCTCTTTTCGAGCGTCTT 135642 Query 139980 GTAGCCAAAGTA 139991 | |||||||||| Sbjct 135641 GAAGCCAAAGTA 135630 >seq880 Length=46309 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || |||||||| || || || | Sbjct 27234 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 27175 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| || || || || || ||||| Sbjct 27174 GACTCGATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAG 27115 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 27114 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 27055 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || ||||| ||||| || ||| | ||| | || |||| || || || Sbjct 27054 ATCCAGAAGGAGTCGACGCTTCACCTTGTGCTCCGCCTGCGTGGTGGTGG 27005 >seq389 Length=167588 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||| ||||| || || || |||||||| || || | || Sbjct 110547 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACGCTCGACGTCGAGCCGTCC 110488 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| || || || || || || || Sbjct 110487 GACTCGATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 110428 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || ||||| ||||| | | || || || ||| Sbjct 110427 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAAC 110368 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | || |||| | || |||||| Sbjct 110367 ATCCAGAAGGAGTCGACGCTCCACCTCGTCCTGCGCCTTCGTGGAGGC 110320 >seq2606 Length=15791 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | || ||||| || || |||||||| || || | Sbjct 3367 ACCATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACGCTCGACGTCGAGCCT 3426 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || |||||||| ||||| || || || || || ||| Sbjct 3427 TCGGACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGAT 3486 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || | ||||| ||||| || ||||| ||||| | | | | || || || Sbjct 3487 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTTCGGACTAC 3546 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||||| || ||||| ||||| || ||| | || | || |||| || || || Sbjct 3547 AACATCCAGAAGGAGTCGACGCTTCACCTTGTCCTTCGCCTGCGTGGTGGTGG 3599 >seq1051 Length=134064 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || ||||| || || | | Sbjct 119958 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCGTCG 120017 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| || || || || || ||||| Sbjct 120018 GACTCCATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 120077 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 120078 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 120137 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| | || | || || ||| Sbjct 120138 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTCCGTGGCGGC 120185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449880380169360