Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq880 140 2e-28 seq2606 136 3e-27 seq1051 132 3e-26 seq389 111 1e-19 seq1567 107 1e-18 >seq880 Length=46309 Score = 140 bits (154), Expect = 2e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||| ||||| |||||||| ||| |||| | || Sbjct 27023 AGCACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 27082 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || ||||| || | || | ||||||||||| Sbjct 27083 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATACCCTCCTTGTCC 27142 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | ||||| || || ||| || || | || |||||| Sbjct 27143 TGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAGGGCTCCACGTCGAGCGTGATGGTC 27202 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || ||||| | |||||| || |||||||||||||| Sbjct 27203 TTGCCCGTCAAGGTCTTGACGAAGATCTGCATGAT 27237 >seq2606 Length=15791 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || ||||||||| ||||| |||||||| ||| |||| | || Sbjct 3581 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCC 3522 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || ||||| || | || | ||||||||||| Sbjct 3521 TCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 3462 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | ||||| || | |||||| || | || |||||| Sbjct 3461 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGCGTGATGGTC 3402 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| | ||||| || |||||||||||| Sbjct 3401 TTACCCGTCAAAGTCTTGACGAAGATCTGCATG 3369 >seq1051 Length=134064 Score = 132 bits (146), Expect = 3e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| |||||||| ||| |||| | || || || ||||| |||||||| Sbjct 120149 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 120090 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| || | || | ||||||||||| | || || || || ||| Sbjct 120089 GATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 120030 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || || || | ||||||||| | ||| |||||||| ||||| || ||||| || Sbjct 120029 GTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGAC 119970 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 119969 GAAGATCTGCATG 119957 Score = 127 bits (140), Expect = 1e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| |||||||| ||| |||| | || || || ||||| |||||||| Sbjct 119921 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 119862 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| || | || | ||||||||||| | || || || || ||| Sbjct 119861 GATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 119802 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || || || | ||||||||| | ||| |||||||| ||||| || ||||| || Sbjct 119801 GTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGAC 119742 Query 34966 AAAGATCTGCATG 34978 ||||| |||||| Sbjct 119741 GAAGATTTGCATG 119729 >seq389 Length=167588 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 110335 CAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 110394 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || || |||||||| | || | ||||||||||| Sbjct 110395 CTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 110454 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | ||||| || | |||||| || | || || || Sbjct 110455 CTGGATCTTCTGCTTGACGTTGTCAATCGAGTCGGACGGCTCGACGTCGAGCGTGATCGT 110514 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || ||||| ||||| || ||||| |||||| Sbjct 110515 CTTGCCGGTGAGCGTCTTGACGAAGATTTGCATG 110548 >seq1567 Length=70164 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| ||||| || |||| |||| Sbjct 49815 AGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCC 49874 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || ||||| || | || | ||||||||||| Sbjct 49875 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 49934 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | ||||| || || ||| || || | || |||||| Sbjct 49935 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGCGTGATGGTC 49994 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || || |||||||| Sbjct 49995 TTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 50026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325680645755378