Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq2647 93.3 6e-14 seq1214 91.5 2e-13 >seq2647 Length=4394 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||||||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| || Sbjct 2385 ATTCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAAT 2444 Query 8716 TCCCCGACGAGGAG 8729 |||| |||| |||| Sbjct 2445 TCCCGGACGGGGAG 2458 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGG-TAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| |||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 2387 TCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 2446 Query 11789 CCCGACGAGGAG 11800 || |||| |||| Sbjct 2447 CCGGACGGGGAG 2458 >seq1214 Length=1413 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| ||| Sbjct 1090 TTCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATT 1031 Query 8717 CCCCGACGAGGAG 8729 ||| |||| |||| Sbjct 1030 CCCGGACGGGGAG 1018 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGG-TAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| |||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 1089 TCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 1030 Query 11789 CCCGACGAGGAG 11800 || |||| |||| Sbjct 1029 CCGGACGGGGAG 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652819812365280