Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq389 140 3e-28 seq2606 134 1e-26 seq1567 134 1e-26 seq1051 123 3e-23 seq880 123 3e-23 seq400 87.8 2e-12 >seq389 Length=167588 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| |||||||| ||||| || ||||| || ||||||||||||| Sbjct 110321 CCTCCACGAAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 110380 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| ||||| || | |||||||| || || || Sbjct 110381 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGA 110440 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || ||||| ||| | | |||||||| || ||| Sbjct 110441 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCGGACGGCTCGACG 110500 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| | || || ||||| |||||||| Sbjct 110501 TCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 110547 >seq2606 Length=15791 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| ||||| || ||||| || ||||||||||| || |||| || ||| || Sbjct 3578 ACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCA 3519 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | ||||||||||| || || ||||| || || || || Sbjct 3518 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGG 3459 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || ||||| ||| | | ||| || | || |||||||| || ||||| ||| Sbjct 3458 ATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGCGTGATGGTCTTA 3399 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| || ||||| Sbjct 3398 CCCGTCAAAGTCTTGACGAAGATCTGCAT 3370 >seq1567 Length=70164 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| ||||| || ||||| || ||||||||||||| | ||| | || ||| Sbjct 49818 ACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCG 49877 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | ||||||||||| || || ||||| || || || || Sbjct 49878 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGG 49937 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || ||||| ||| | | ||| || | || |||||||| || ||||| || Sbjct 49938 ATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGCGTGATGGTCTTG 49997 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 || || ||||| || |||||||| ||||| ||| ||| Sbjct 49998 CCAGTCAAAGTCTTGACGAAAATCTGCATATTGCTTT 50034 >seq1051 Length=134064 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| ||||| || ||||| || ||||||||||| | |||| | Sbjct 119947 AGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 119888 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || || | ||||||||||| || || ||||| || Sbjct 119887 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCC 119828 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || ||| | | ||| |||| || || ||||| || Sbjct 119827 TTGTCCTGGATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTG 119768 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || ||||| |||||||| Sbjct 119767 ATGGTCTTGCCCGTCAGCGTCTTGACGAAGATTTGCAT 119730 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||||||| ||||| || ||||| || ||||||||||| Sbjct 120184 CCGCCACGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 120125 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || || || | ||||||||||| || || Sbjct 120124 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGA 120065 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || ||| | | ||| |||| || || Sbjct 120064 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGCTCGACA 120005 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || ||||| || ||||| Sbjct 120004 TCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 119958 >seq880 Length=46309 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| | |||| | Sbjct 27017 AGGCGGAGCACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 27076 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || || | ||||||||||| || || || || || Sbjct 27077 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATACCCTCC 27136 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || ||||| ||| | | ||| || | ||||||||||| || Sbjct 27137 TTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAGGGCTCCACGTCGAGCGTG 27196 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || ||||| || ||||| Sbjct 27197 ATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 27234 >seq400 Length=224259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 256/386 (66%), Gaps = 15/386 (4%) Strand=Plus/Plus Query 7708 TCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTG 7767 || ||||| || | || |||||||||| ||| || || ||||||||| | |||||| Sbjct 135843 TCGTCGTGCTTCCTTCTCGCCATGCGCGACGACTCAATTGAGGGCATTTACGATACGCTG 135902 Query 7768 CGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTG 7827 | |||||| |||||||| | | ||| || || ||| | ||| | || || | Sbjct 135903 AAGCAGTGCGCCTGCATTTCCAAGTGGGCCGGTGGCATTGGTGTCAACATTCACAACATT 135962 Query 7828 CG--CG-CCAACGGTAGCCGCAT-CGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 || || ||||| ||| ||| |||| | || ||||| | | |||| | || Sbjct 135963 CGTTCGACCAAC---AGCTACATTCGTGGC-ACGAACGGCTCCTCTAACGGTATCATTCC 136018 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGA---AAGCGCAA 7940 |||| | ||||||||||| | | | ||| | || ||||| || || ||||| || Sbjct 136019 CATGCTTCGCGTGTTCAACGATACAGCGCGTTACGTGGACCAAGGCGGTGGTAAGCGGAA 136078 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 ||| | |||||| || | ||||||||||||||||| |||| || | || | || Sbjct 136079 GGGCTCTTTTGCCATGTACCTTGAGCCGTGGCACGCGGATATTTTCGAGTTCCTTGACCT 136138 Query 8001 GCGTCGCAACATGGGTTGCGAAGACAGCA--AAGCGCGCGATCTATTCTTCGGATTGTGG 8058 ||| || ||| || ||| |||||||| || |||| | ||||| Sbjct 136139 CAAGAAGAACCACGGCAACGA--ACTGCACCGCGCGCGCGACCTCTTCTATGCCATGTGG 136196 Query 8059 GTGCCCGATCTGTTTATGAGGCGCGT 8084 | ||||||||||| |||| |||||| Sbjct 136197 ATCCCCGATCTGTTCATGAAGCGCGT 136222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505379055876240