Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq400 277 2e-69 seq2528 107 2e-18 seq2543 91.5 2e-13 seq2845 89.7 6e-13 >seq400 Length=224259 Score = 277 bits (306), Expect = 2e-69 Identities = 1005/1543 (65%), Gaps = 45/1543 (3%) Strand=Plus/Minus Query 110646 TGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCA 110705 |||| || || | ||||| ||||||||| || ||| || || || || | | | Sbjct 137130 TGAGTTCCTTCATGAGGTACTTGTTGACGATCGTAAATTCGCCCGCAAGCACGCGCCGCG 137071 Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 ||| ||||| | ||| |||| || | | |||| || || || | ||| || || || | Sbjct 137070 AGTACATGTTGGACGTGAATGGCTCGATGGATTCGTTGTTGCCGAGGATCTGGGCTGTCG 137011 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGA--TGCG 110823 | || || ||||| || |||| || ||| ||| || | || | | | |||| Sbjct 137010 ATGCCGTGGGCATCGGCGCCAGCAGTAGAGAGTTGCGCACGCCATGAGCAGCCACCTGCG 136951 Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAAC 110881 ||||||| ||||||| || || | | || |||| |||||||||| || Sbjct 136950 --CCTTGAGCGTCGCCCAGTCCCAGA-GATCAGTCGGCGTCACAC-CCCACATGTCGTAC 136895 Query 110882 TG-AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG-GCTT 110939 || |||| |||| |||| |||| || || | || || |||| || | |||| Sbjct 136894 TGGAAGCGGCCCT-GGGAGACGGGCGACCCGGAGTACGTCTCGTAGGGGCCGAGCTGCTT 136836 Query 110940 CAGCCAATTCACAGCTC-GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 || | || || | | ||||| || ||||| || || || |||||||| | Sbjct 136835 G-GCGAGCTC-CATCGAAGTCTCCATAGAGGCGTGGTAGATCGTCTCAAAGATCTGGATG 136778 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || | || |||||| || || || || | ||||| | || || |||||||| Sbjct 136777 TTGAGCTTCTTGGCCTCGGGCGACTCGAACGGGTAGCCCATGAGGATGAAGGCATCCGCG 136718 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 || || || ||||| | || | || | ||| ||||| || || ||||| ||| Sbjct 136717 AGGCCCTGGACACCGATGCCGACGGGGCGGTGGCGCATGTTGCTGTTGCGCGCCTCCTCG 136658 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 | || || | || |||||| || ||| | || ||| || ||||| |||| Sbjct 136657 ATCGGGTAGTAGTTGACGTCAATCACCTTGTTCAAGTTGCGGGTGACGATCTTGGTGACC 136598 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 111238 | || || || | | | || || || | | ||| | ||| |||| | || || Sbjct 136597 TTGTGGAGGTTCTTAAAGTCGAA-----GACAC-CGTCAGTAACAAACTTGGAGAGCGCA 136544 Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 111298 || || || | ||||| ||||| ||| ||||| |||||||| | | ||| Sbjct 136543 ATGGACGCGAGGTTGCACACAGCGACCTCGTCCTTGCTCGTGTACTCGATGACTTCGCAG 136484 Query 111299 CATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCA 111358 || | ||| ||||| ||||| || | |||| ||||| ||| |||||||| Sbjct 136483 CAAAGGTTACTGCTCTTGATCGTACCAAGGTTCTGCTGGTTCGACTTGGAATTGCACGCG 136424 Query 111359 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAA 111418 |||||||| |||||||||||||| || ||||| |||| || | ||| || | ||| Sbjct 136423 TCCTTGTAAAGCATGTAGGGCGTGCCAGTCTCGATCTGCGAATCGAGCATCG-----CAA 136369 Query 111419 ACATCGGCGGCTGGTAC--AATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGT 111473 || | || | ||| | ||| | ||| || || ||||| ||||||||||| | || Sbjct 136368 ACCACAGCTGTTGGGCCTTGATGACCTTGCGAGCGCGACCCTCTGCCTCGTACTTGGCGT 136309 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 | || ||||| ||||| | ||| | || ||||| |||||| || || | || || || Sbjct 136308 ACAGCGCTTCGAACTCGGCGCCC-CAGCAGTCGGCGAGACCAGGGGCTTCGTTCGGGCAA 136250 Query 111533 AAAAGAGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 || || ||| | || | || ||| || ||||||||||| || || || ||||||| Sbjct 136249 AAGAGGCTCCACT--CCCCGTTGGACTCGACGCGCTTCATGAACAGATCGGGGATCCACA 136192 Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCA 111649 || | ||||| || | || | ||||| || ||||| || | | ||| Sbjct 136191 TGGCATAGAAGAGGTCGCGCGCGCGGTGCAGTTCGTTGCCGTGGTT-CTTCTTGAGGTCA 136133 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG- 111708 |||||||| | |||||||||||||| |||||||| || | || | ||| ||||| || Sbjct 136132 AGGAACTCGAAAATATCCGCGTGCCACGGCTCAAGGTACATGGCAAAAGAGCCCTTCCGC 136073 Query 111709 --ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 || || |||| | || || |||||||| |||| || ||||||||||| ||||| Sbjct 136072 TTACCACCGCCTTGGTCCACGTAACGCGCTGTATCGTTGAACACGCGAAGCATGGGAATG 136013 Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATG 111825 ||||| | || || || || || ||||| || | || | | | | | || Sbjct 136012 ATACCGTTAGAGGAGCCGTTCGTGCCACGAAT-GTAGCTGTTGGTCGAACGAATGTTGTG 135954 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 |||| | ||||| || || |||||||| || || || |||| | | || || | Sbjct 135953 AATGTTGACACCAATGCCACCGGCCCACTTGGAAATGCAGGCGCACTGCTTCAGCGTATC 135894 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 || || || | |||||||| || |||||| ||||||||| || | ||| || Sbjct 135893 GTAAATGCCCTCAATTGAGTCGTCGCGCATGGCGAGAAGGAAGCACGACGAGAGCTGTGG 135834 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACA 112004 | || ||||| || |||||||| || || || ||||| |||| ||| || || Sbjct 135833 ACGAGGCGTACCGGCGTTGAAGAGAGTAGGCGTCGCGTGCGTGAA-GTACAACTGACTCA 135775 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 | | ||||| || | | | | |||||||| ||| |||||| |||| || || | Sbjct 135774 TGTACTCGTACGTGTTGAGCGCCGCCTCAATGTCCTCCTTGTGGATACCGACAGCAACAC 135715 Query 112065 GCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCT 112124 |||||| ||| | ||| ||| ||| | || ||| || || |||||||||||| Sbjct 135714 GCATGATCATATGCTGCGGGCGTTCGCACACCTTGTCATTGACACGCAGAAGATAGCTCT 135655 Query 112125 TCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | || || || |||| |||||||| | | ||| |||| || Sbjct 135654 TTTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCG 135612 >seq2528 Length=14935 Score = 107 bits (118), Expect = 2e-18 Identities = 306/459 (67%), Gaps = 11/459 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| |||||||||||||| || | ||| || | ||||| Sbjct 4792 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATCATATCCATC 4851 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||| ||||| ||||| |||| | | | |||||| || || ||||| || | Sbjct 4852 CAGTCGAATGGGTTCTTGGCGTGGAAGAGCTTGGTGGCGCC--AAGGGCGTTGAGAAGGC 4909 Query 122489 GATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT- 122546 | || | || | | || ||||| | | |||| | |||||||| |||||||| | Sbjct 4910 GGTCGGCGCAGA-ATTCGATGTATTGGCACATGAGCGTCGAGTTCATGCCGATGAGTTCG 4968 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 ||| ||||| | || | | |||| ||||| ||||| || || || | ||| | Sbjct 4969 ACA-GGGAGCGATTCGGAAACGAACTGCTTCTCGATCTCGACGGCGTCACCGATGATCTC 5027 Query 122607 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACT 122665 ||||| ||| | | | | | || | || | | | | || ||| || | Sbjct 5028 ATGGATGCGCTCGTTTGAGAGCTTGTTGATGAGCTTCGAGTACATGAGGCA-GGCGAAGT 5086 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| || || || || || || || || ||||| || |||| | || ||||||| Sbjct 5087 CGCAGTGAAGGCCTTCGTCGCGCGAGATGAGCTCATTCGAAAAGCTCAAGCCCGGCATGA 5146 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 |||| |||||||| | ||| | || | |||||| || || |||||||| || || || | Sbjct 5147 GACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTCGA 5206 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCG-AAGGAGCGA 122823 || || || |||| | |||||||||| ||| ||||| Sbjct 5207 CAGCAGCGAAGGCAACGATGCGTTCGGCGTAAGCAGCGA 5245 >seq2543 Length=13544 Score = 91.5 bits (100), Expect = 2e-13 Identities = 187/271 (69%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 181779 GTGAAGATATACCTCGT--TTGAGAAGCGTCTTTACCACCCATGAGACGCGTACCAAATT 181836 |||||||| |||| || ||| | |||||||| || ||| || ||||||||||| | Sbjct 4841 GTGAAGATGTACCGCGGACTTGCG--GCGTCTTTGCCGCCCTGTAGTCGCGTACCAAACT 4784 Query 181837 GACCACATGGCT-CAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTA 181895 | || | || | ||||| | | |||||| | || ||||| | ||||| || Sbjct 4783 GCCCCGACGGGTACAAGAGCGGGAG-GTTGTTGGCGCCAACGTAGTCTTGGGCCATGTTG 4725 Query 181896 ACGATGGTA-TCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATA 181954 ||||| || | |||| | || |||||||||||||||| || | | || || || Sbjct 4724 ACGATTGTGCTGTGCAACG-ACGCTTCACCGTGGTGGTACGCCGTATGCTCGGCGCAGTA 4666 Query 181955 TGCCGCCAACTGTGCCACCTTCATTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACAT 182014 |||| | ||| ||||| || | || | |||| ||| | |||||| ||| | | Sbjct 4665 GCCCGCGAGCTGCGCCACTTTGACCTCCTTCGTGAGCTTCCGTTTGAAGCACGCAAAGAG 4606 Query 182015 CACTTTCCTCTGCGAAGGCTTGAGACCATCC 182045 |||||||||||| || |||||||| || ||| Sbjct 4605 CACTTTCCTCTGGGACGGCTTGAGTCCGTCC 4575 >seq2845 Length=3788 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 145277 TAAAAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTC 145336 ||| ||||| ||| ||||| |||| | |||| ||||||||||||||| | | || ||||| Sbjct 297 TAACAGCTCCTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTC 356 Query 145337 AAATCCAGGTAGGAGCTTT 145355 |||||| |||||||||||| Sbjct 357 AAATCCCGGTAGGAGCTTT 375 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 145277 TAAAAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTC 145336 |||| |||| ||| ||||| |||| | |||| ||||||||||||||| | | || ||||| Sbjct 2643 TAAACGCTCCTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTC 2584 Query 145337 AAATCCAGGTAGGAGCTTT 145355 |||||| |||||||||||| Sbjct 2583 AAATCCCGGTAGGAGCTTT 2565 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| ||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 3098 GCTCCTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 3039 Query 145342 CAGGTAGGAGCTTT 145355 | |||||||||||| Sbjct 3038 CCGGTAGGAGCTTT 3025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628007962075200