Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq400 239 6e-58 seq2528 154 2e-32 seq2543 105 8e-18 >seq400 Length=224259 Score = 239 bits (264), Expect = 6e-58 Identities = 1186/1858 (64%), Gaps = 79/1858 (4%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| | ||||||| || |||||||||||||| || |||||||| | Sbjct 137445 TGAACTGAATCGCATCGGCCTTGGGGCGCGACCGGAGGTAGTACATGCCGGTCTTGAGAC 137386 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | ||||||| || || | ||||| || | | |||| | | | || | ||| Sbjct 137385 CGCGCTTCCACGCGTAAAAGTGCATCGATGTAAGCTTGCTCACGCTCGGGTCGGCGATGT 137326 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | |||||| || || || ||||||| || || || ||||||| || | || Sbjct 137325 GCACGTTCATCGACTGCGACTGGCAGATGAAGGCGCCTCGGTCGGCCGCCAGGTCCAGCA 137266 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 | ||||| ||||| |||||||| ||| |||| | || ||| || | ||||| Sbjct 137265 CCACCTTCTGCTTGACCTCCCACACCGTCTTGTAAATGTCCTTGATGCGCTTGGGGATCG 137206 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATG--AGATCC--TTCATATCCTTT 118100 ||| || | ||| ||| || |||| ||||| || | | | Sbjct 137205 TGGCGACGCCCTGAA------CACT-GCCACGATCATGCAAGATCTGGTTGCGAACGTCG 137153 Query 118101 GA---CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAAC 118157 | |||||| || | |||| |||| || ||| | ||| ||||| | ||| Sbjct 137152 GCGCTCCAGAGGCCGAGTGAAATGAGTTCCTTCATGAGGTACTTGTTGACGATCGTAAAT 137093 Query 118158 TCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 118217 || ||||| || ||| | | || || |||| |||| ||||||| | | | || ||| Sbjct 137092 TCGCCCGCAAGCACGCGCCGCGAGTACATGTTGGACGTGAATGGCTCGATGGATTCGTTG 137033 Query 118218 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGG 118277 || || | ||| |||||||| || || |||||||| || |||| || || ||| || Sbjct 137032 TTGCCGAGGATCTGGGCTGTCGATGCCGTGGGCATCGGCGCCAGCAGTAGAGAGTTGCGC 136973 Query 118278 AGACCCTTTTC--CCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGT--TGAG-CTTTG 118332 | || | | || |||| ||||||| | ||||||| || | || | | Sbjct 136972 ACGCCATGAGCAGCCACCTGCG--CCTTGAGCGTCGCCCAGTCCCAGAGATCAGTCGGCG 136915 Query 118333 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 118392 || | ||| ||||| || |||||| | || ||||| | ||||| || | | Sbjct 136914 TCACACCC---CACATGTCGTACTGGAAGCGGCCCTGGGAGACGGGCGACCCGGAGTACG 136858 Query 118393 TCTCATATGGGCCCTCAACCTCCGCCAATTCG-GAGCTCGCCTCGAGGGCT--------G 118443 |||| || ||||| | || | || | |||||| | |||| | || | Sbjct 136857 TCTCGTAGGGGCCG---AGCTGC-----TTGGCGAGCTC-CATCGAAGTCTCCATAGAGG 136807 Query 118444 CGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACG 118503 |||| || || || ||||| || | || | |||||||||| || || |||| Sbjct 136806 CGTGGTAGATCGTCTCAAAGATCTGGATGTTGAGCTTCTTGGCCTCGGGCGACTCGAACG 136747 Query 118504 CG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCG 118561 | || | || | || || |||||||||| || |||||||||| ||| | ||||| Sbjct 136746 GGTAGCC--CATGAGGATGAAGGCATCCGCGAGGCCCTGGACACCGATGCCGACGGGGCG 136689 Query 118562 ATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCT 118621 || | ||| || || || || ||| | || || | || || || ||| | Sbjct 136688 GTGGCGCATGTTGCTGTTGCGCGCCTCCTCGATCGGGTAGTAGTTGACGTCAATCACCTT 136629 Query 118622 ATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCG 118681 || | || |||||| | ||| |||| | || || || | | || || | Sbjct 136628 GTTCAAGTTGCGGGTGACGATCTTGGTGACCTTGTGGAGGTTCTTAAAGTCGAA-----G 136574 Query 118682 AGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 118741 | | | ||| | ||| |||| | || || || ||||| || || ||||||| | ||| Sbjct 136573 ACAC-CGTCAGTAACAAACTTGGAGAGCGCAATGGACGCGAGGTTGCACACAGCGACCTC 136515 Query 118742 ATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAA 118801 ||||| |||||||| || | ||| ||| | ||| ||||| || || || | Sbjct 136514 GTCCTTGCTCGTGTACTCGATGACTTCGCAGCAAAGGTTACTGCTCTTGATCGTACCAAG 136455 Query 118802 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGT 118861 ||||| || || ||||| | || ||||| ||||||||||||||||| ||||| || || Sbjct 136454 GTTCTGCTGGTTCGACTTGGAATTGCACGCGTCCTTGTAAAGCATGTAGGGCGTGCCAGT 136395 Query 118862 CTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAG-TGGCGTTG- 118919 ||| | || || | ||| || || || ||| | | | ||| | || | ||| Sbjct 136394 CTCGATCTGCGAATCGAGCATCGCAAACC--ACAGCTGTTG--GGCCTTGATGACCTTGC 136339 Query 118920 --GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCT 118977 || || |||||| |||||||||| | ||| || ||||| ||||| | ||| | | Sbjct 136338 GAGCGCGACCCTCTGCCTCGTACTTGGCGTACAGCGCTTCGAACTCGGCGCCCCAGCAGT 136279 Query 118978 CTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCC 119037 | | ||| || || || | | ||||| ||||| ||| | || ||| || | Sbjct 136278 CGGCGAGACCAGGGGCTTCGTTCGGGCAAAAGAGGCTCCACTCCCCGTTGGACTCGACGC 136219 Query 119038 GCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTC-- 119095 |||||||||| || || |||||||| | || ||||||| || || ||| | | | Sbjct 136218 GCTTCATGAACAGATCGGGGATCCACATGGCATAGAAGAGGTCGCG--CGCGCGGTGCAG 136161 Query 119096 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 119155 ||| | || || || | || | || || | ||||||||||||||||| || Sbjct 136160 TTCGTTGCCGTGGTTCTTCTTGAGGTCAAGGAACTCGAAAATATCCGCGTGCCACGGCTC 136101 Query 119156 CAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGT 119212 ||||||| || | || ||||| || || ||| | |||| || || | ||| || Sbjct 136100 AAGGTACATGGCAAAAGAGCCCTTCCGCTTACCACCGCCTTGGTCCACGTAACGCGCTGT 136041 Query 119213 GGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT 119272 |||| || || |||||||| ||||||||||| | || ||| || || || ||||| Sbjct 136040 ATCGTTGAACACGCGAAGCATGGGAATGATACCGTTAGAGGAGCCGTTCGTGCCACGAAT 135981 Query 119273 ACGAGACTTATTGGCTCTGAC----ATCGTGGATGTGCATACCAATACCCCCTGCCCACT 119328 | | |||| || || | ||| |||| | |||||| || || ||||||| Sbjct 135980 ---GTAGCTGTTGG-TCGAACGAATGTTGTGAATGTTGACACCAATGCCACCGGCCCACT 135925 Query 119329 TTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 119388 | || || ||||||| | | || | |||| || || || || ||||| | Sbjct 135924 TGGAAATGCAGGCGCACTGCTTCAGCGTATCGTAAATGCCCTCAATTGAGTCGTCGCGCA 135865 Query 119389 TTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTG 119448 | |||| |||||||| ||| | || || | || ||||| |||||||||||||| | Sbjct 135864 TGGCGAGAAGGAAGCACGACGAGAGCTGTGGACGAGGCGTACCGGCGTTGAAGAGAGTAG 135805 Query 119449 GTGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGA 119507 | |||||||| |||| ||| || ||| | ||||| || | | | || | Sbjct 135804 GCGTCGCGTGCGTGAA-GTACAACTGACTCATGTACTCGTACGTGTTGAGCGCCGCCTCA 135746 Query 119508 ATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTG-GGGTGTTTCCAT 119566 ||||| ||| ||| ||||||| | || ||||| | ||| | || ||| ||| || Sbjct 135745 ATGTCCTCCTTGTGGATACCGACAGCAACACGCATGATCATATGCTGCGGGCGTTCGCA- 135687 Query 119567 CAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAG 119624 || | ||| || | | | || || ||||| || | ||||||| ||||| ||| Sbjct 135686 CACCTTGTCATTGACACGCAGAAGATAGCTCTTTTCGAGCGTCTTGAAGCCAAAGTAG 135629 >seq2528 Length=14935 Score = 154 bits (170), Expect = 2e-32 Identities = 555/848 (65%), Gaps = 24/848 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | | ||| | ||||| Sbjct 4792 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATCATATCCATC 4851 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || ||||||||||| | || | | ||| |||| | ||| ||||| || | Sbjct 4852 CAGTCGAATGGGTTCTTGGCGTGGAAGAGCTTGGTGGCGC--CAAGGGCGTTGAGAAGGC 4909 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-A 129904 | || | | | | || ||||| | |||| | |||||||| |||||||| | | Sbjct 4910 GGTCGGCGCAGAATTCGATGTATTGGCACATGAGCGTCGAGTTCATGCCGATGAGTTCGA 4969 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || ||||||| || | | |||| |||||| || || || || || | | ||| | Sbjct 4970 CA-GGGAGCGATTCGGAAACGAACTGCTTCTCGATCTCGACGGCGTCACCGATGATCTCA 5028 Query 129965 TGAATGGTCTCCGT-GCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACT 130022 || ||| ||| | | || | | ||| | || | | | | || ||| || | Sbjct 5029 TGGATGCGCTCGTTTGAGAGCT-TGTTGATGAGCTTCGAGTACATGAGGCA-GGCGAAGT 5086 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| || || ||||| || |||||||| |||||||| |||| || || ||||||| Sbjct 5087 CGCAGTGAAGGCCTTCGTCGCGCGAGATGAGCTCATTCGAAAAGCTCAAGCCCGGCATGA 5146 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 |||| |||||||| | |||||| || | || || |||||||||||||| || || || | Sbjct 5147 GACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTCGA 5206 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTG-TATCAAACCACTT 130200 || ||||| |||| || || || || ||| ||| || || | | | ||||||| Sbjct 5207 CAGCAGCGAAGGCAACGATGCGTTCGGCGTAAGCAGC--GATTTGGTTGTTGCACCACTT 5264 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC---TTCAAAGAG 130257 | ||||||||| ||||| || || |||||||| || | ||| || | | | Sbjct 5265 GAGCGCCCACTGGGCCTTGCGCTGGACACACGGGATCGTGTCGATGGCGCGGAGCACGCG 5324 Query 130258 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 130317 ||||||| | | || || ||||||||| | || || ||| || || |||| Sbjct 5325 GTCCTTCTCAACCG-TG--TCCTTGATGTACGTGTCAATAAGTAGCGAGTAGACTTCGGA 5381 Query 130318 ATGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 130377 |||| ||||| || | |||| | | ||||| | || ||||| | ||| || Sbjct 5382 GTGGATGTTTTCAATAGCGATCTGAAAGCCATAGAAGCAACGAGCTTCAGGCACCTGAAC 5441 Query 130378 CTCATCTGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 130435 || | || | || | | || | | |||||| ||||| || || ||| | || || Sbjct 5442 TTCGT-TGGAGAAGT-TCATGGCCAAGTTCTCATTTACAATGCCGTCAGACGCGGCGAAG 5499 Query 130436 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCA 130495 ||||| || | | | | ||||| | || || || | || ||| |||||| | Sbjct 5500 AACGCAAGCACGTGCGTGATGAAGAAGCGCTCGTTGTCCGTGAGCTTCTCCCAGTCCTTC 5559 Query 130496 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAG 130555 ||||| | |||||| | || || || ||||| |||| | |||||||| || Sbjct 5560 AGATCGTGGACGAGATCGAGTTCTTCGGCTGTCCAGAAGCTCGCCTCGGCCTTCTTGTAC 5619 Query 130556 AGTTCCCA 130563 | |||||| Sbjct 5620 ATTTCCCA 5627 >seq2543 Length=13544 Score = 105 bits (116), Expect = 8e-18 Identities = 283/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 178885 CCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 178944 |||||||| ||||||||||| |||||||| || | ||| || || | |||| ||| | Sbjct 4994 CCCGTGCCAATGCCTTCGGTGCCGTTCACAAGCAGCATGGGCAGGATGGGCACGTAGTAC 4935 Query 178945 TCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTC--CCTCG 179002 ||| || | | | ||||| || | | || | |||| || ||||| ||||| Sbjct 4934 GTTGGCTCGACGGGCTGGCCGTCGTCGTGGACGTACTGCAGCAGCGGTTCGTCGGCCTCG 4875 Query 179003 GATCAAAGATTTTACGAGCATCCCTGGTG-AGTTTTGTGAAGATGTACCTCG--TTTGAG 179059 | | | || | | || ||| || | ||||||||||||| || ||| | Sbjct 4874 GGGTACACCAGGCGCGTGTA---CTTGTGCAGGTGCGTGAAGATGTACCGCGGACTTGCG 4818 Query 179060 ACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGA 179119 || |||||||| ||| || ||||| ||||| || || | || | | ||| || Sbjct 4817 --GCGTCTTTGCCGCCCTGTAGTCGCGTACCAAACTGCCCCGACGGGTACAAGAGCGGGA 4760 Query 179120 TATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACT 179178 ||||| | || | |||||| | ||||| ||||| || || | || | || || Sbjct 4759 GGTTGTTGGCGCCAACGTAGTCTTGGGCCATGTTGACGATTGTGCTGTGC-AACGACGCT 4701 Query 179179 TCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATC 179238 |||||||| ||||| |||| | || || || |||| | ||||||||| || | | Sbjct 4700 TCACCGTGGTGGTACGCCGTATGCTCGGCGCAGTAGCCCGCGAGCTGCGCCACTTTGACC 4641 Query 179239 TCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGG 179298 || | | |||| ||| | |||||||||| | | ||| || || || || |||||||| Sbjct 4640 TCCTTCGTGAGCTTCCGTTTGAAGCACGCAAAGAGCACTTTCCTCTGGGACGGCTTGAGT 4581 Query 179299 CCGTC 179303 ||||| Sbjct 4580 CCGTC 4576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618411529392720