Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq400 273 3e-68 seq2528 100 3e-16 seq2543 86.0 7e-12 >seq400 Length=224259 Score = 273 bits (302), Expect = 3e-68 Identities = 792/1203 (66%), Gaps = 27/1203 (2%) Strand=Plus/Plus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGTGTCTTGATG 104215 || ||||| |||| || || || ||||||||||||| || || ||| || Sbjct 135630 TACTTTGGCTTCAAGACGCTCGAAAAGAGCTATCTTCTGCGTGTCAATGACAAGGTGTGC 135689 Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 ||| ||| ||| | ||| ||||||| || || ||||||| || ||| |||||||| Sbjct 135690 GAACGCCCGCAGCATATGATCATGCGTGTTGCTGTCGGTATCCACAAGGAGGACATTGAG 135749 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAAC 104334 | | | | || ||||| | ||| || ||| |||| ||||| || || || Sbjct 135750 GCGGCGCTCAACACGTACGAGTACATGAGTCAGTTGTAC-TTCACGCACGCGACGCCTAC 135808 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394 |||||||| || ||||| || | || || | || ||||||||| |||||| Sbjct 135809 TCTCTTCAACGCCGGTACGCCTCGTCCACAGCTCTCGTCGTGCTTCCTTCTCGCCATGCG 135868 Query 104395 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 104454 || |||||||| | || || || | || || | | |||| || || || ||||| Sbjct 135869 CGACGACTCAATTGAGGGCATTTACGATACGCTGAAGCAGTGCGCCTGCATTTCCAAGTG 135928 Query 104455 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGG 104513 ||| || || ||||| | |||| || | | | | | || | || ||||| | Sbjct 135929 GGCCGGTGGCATTGGTGTCAACATTCACAACATTCGTTCGACCAACAGCTAC-ATTCGTG 135987 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || || || || | ||||| ||||| ||||||||||| || |||| ||||||| Sbjct 135988 GCACGAACGGCTCCTCTAACGGTATCATTCCCATGCTTCGCGTGTTCAACGATACAGCGC 136047 Query 104574 GCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 | || || | |||| || || || ||||| ||| | || | || |||||||| | Sbjct 136048 GTTACGTGGACCAAGGCGGTGGTAAGCGGAAGGGCTCTTTTGCCATGTACCTTGAGCCGT 136107 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 ||||||||||||| | ||||||||||| | ||||| || |||| || | Sbjct 136108 GGCACGCGGATATTTTCGAGTTCCTTGACCTCAAGAAGAACCACGGCAACGA-ACTGCAC 136166 Query 104691 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 | || ||||| ||||||| || | ||||| || ||||| ||||||||| | || ||| Sbjct 136167 CGCGCGCGCGACCTCTTCTATGCCATGTGGATCCCCGATCTGTTCATGAAGCGCGTCGAG 136226 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGT 104808 | || | ||| |||||||| || || | || ||||||||| |||| ||| | Sbjct 136227 TCCAACGGGGAGTGGAGCCTCTTTTGCCCGAACGAAGCCCCTGGTCTCGCCGACTGCTG- 136285 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 ||| | ||||| ||||| || ||| | |||||||||| ||| ||||| | || | Sbjct 136286 GGGCGCCGAGTTCGAAGCGCTGTACGCCAAGTACGAGGCAGAGGGTCGCG---CTCGCAA 136342 Query 104869 GGTGCCAGC--TGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 104923 ||| || | ||| | ||||| || || ||| | || || | ||||||||| Sbjct 136343 GGT--CATCAAGGCCCAACAGCTGTGGTTTGCGATGCTCGATTCGCAGATCGAGACTGGC 136400 Query 104924 ACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 104983 || || |||||||||||||| ||||| || || ||| || || |||| | ||| Sbjct 136401 ACGCCCTACATGCTTTACAAGGACGCGTGCAATTCCAAGTCGAACCAGCAGAACCTTGGT 136460 Query 104984 GTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 ||||||||| || || || ||| || | || | || ||| || ||| Sbjct 136461 ACGATCAAGAGCAGTAACCTTTGCTGCGAAGTCATCGAGTACACGAGCAAGGACGAGGTC 136520 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 |||||||| |||||||| || || || ||| |||||| ||| | ||| | | Sbjct 136521 GCTGTGTGCAACCTCGCGTCCATTGCGCTCTCCAAGTTTGT-----TACTGACGGTGTC- 136574 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 || || | | | || |||||| | || || || | |||||| ||| | |||| || Sbjct 136575 TTCGACTTTAAGAACCTCCACAAGGTCACCAAGATCGTCACCCGCAACTTGAACAAGGTG 136634 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 ||||| || | ||||| | ||| || || || || ||| | ||||| || Sbjct 136635 ATTGACGTCAACTACTACCCGATCGAGGAGGCGCGCAACAGCAACATGCGCCACCGCCCC 136694 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 105283 | || ||||||| ||||| |||||||||| ||||| || || || | || || Sbjct 136695 GTCGGCATCGGTGTCCAGGGCCTCGCGGATGCCTTCATCCTCATGGGCTACCCGTTCGAG 136754 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 || ||| || ||| | |||| | || |||||||| || || |||||| || | Sbjct 136755 TCGCCCGAGGCCAAGAAGCTCAACATCCAGATCTTTGAGACGATCTACCACGCCTCTATG 136814 Query 105344 GAG 105346 ||| Sbjct 136815 GAG 136817 >seq2528 Length=14935 Score = 100 bits (110), Expect = 3e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| || || || ||||||||||| ||||||||| | || | |||||||||||||| || Sbjct 5208 TGTCGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 5149 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||||| || | |||| || || ||||| ||||| || ||||| || || ||| Sbjct 5148 TCTCATGCCGGGCTTGAGCTTTTCGAATGAGCTCATCTCGCGCGACGAAGGCCTTCAC 5091 >seq2543 Length=13544 Score = 86.0 bits (94), Expect = 7e-12 Identities = 186/271 (69%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 168431 GTAAAGATATACCTCGT--TTGAGACGCATCCTTACCACCCATGAGACGCGTACCAAACT 168488 || ||||| |||| || ||| | || || || || ||| || ||||||||||||| Sbjct 4841 GTGAAGATGTACCGCGGACTTGCGGCG--TCTTTGCCGCCCTGTAGTCGCGTACCAAACT 4784 Query 168489 GACCACACGGCT-CAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTG 168547 | || |||| | ||||| | || ||||| | || | |||||| | |||| ||| Sbjct 4783 GCCCCGACGGGTACAAGA-GCGGGAGGTTGTTGGCGCCAACGTAGTCTTGGGCCATGTTG 4725 Query 168548 ACAATCGTGTCCGCGAGA-GAGACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAA 168606 || || ||| | | | | || ||||||||||||||||||| | | ||| ||| | Sbjct 4724 ACGATTGTG-CTGTGCAACGACGCTTCACCGTGGTGGTACGCCGTATGCTCGGCGCAGTA 4666 Query 168607 TGCCGCCAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGGAAGCATGCGTACAT 168666 |||| | |||||||||||| | ||| | | |||| ||| | |||||| || | | Sbjct 4665 GCCCGCGAGCTGCGCCACTTTGACCTCCTTCGTGAGCTTCCGTTTGAAGCACGCAAAGAG 4606 Query 168667 AACCTTGCGTTGCGAAGGCTTGAGACCATCC 168697 || || | || || |||||||| || ||| Sbjct 4605 CACTTTCCTCTGGGACGGCTTGAGTCCGTCC 4575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583238475692880