Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2151 194 5e-44 seq1706 156 1e-32 seq1567 100 9e-16 seq2332 86.0 2e-11 seq2213 84.2 7e-11 >seq2151 Length=2205 Score = 194 bits (214), Expect = 5e-44 Identities = 932/1471 (63%), Gaps = 12/1471 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || ||||| | ||||| || || || || || | ||| |||||||| || || || || Sbjct 259 GGCATCGACCTTGGTACGACCTACTCGTGCGTCGGTGTGTGGCAAAACGACCGCGTCGAG 318 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || || ||| | |||||||| || ||||| || || ||||| || Sbjct 319 ATCATCGCCAATGACCAGGGCAACCGCACAACGCCTTCGTACGTGGCCTTCACCGACACA 378 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| | || || || | || || ||||| | || || ||| || ||||| Sbjct 379 GAGCGCCTCATCGGCGACGCCGCCAAGAATCAGGTGGCCATGAACCCAGCCAACACGGTC 438 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 ||||| |||||||| || || || | | || ||||| || | || | Sbjct 439 TTTGACGCTAAGCGCCTCATCGGCCGGAAGTTCCATGACAGTGTCGTGCAGGCCGACATG 498 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || || | || || | || | | | || ||||| || | || | Sbjct 499 AAGCACTGGCCGTTCAAAGTGACAGCGGGCACCAGCGACAAACCGCAGATCGTCGTCAAG 558 Query 349505 TATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAA 349563 | ||||| || || || || || || || || || || || ||||| | | || Sbjct 559 TTCAAAGGCGAGACCAAGACG-TTCCAGCCAGAGGAGATCTCGTCCATGGTGCTCATCAA 617 Query 349564 AATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGT 349623 |||||||| || || || || || | |||||| | || |||| || || || || Sbjct 618 GATGAAGGAGATCGCGGAGGCCTACATCGGTGAACCTGTGGACAATGCCGTCATCACGGT 677 Query 349624 ACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGG 349683 || || |||||||| || | |||||| ||||| ||||| ||||| ||| || || Sbjct 678 TCCTGCGTATTTTAACGACTCGCAGCGTCAGGCAACGAAAGACGCTGGGGCCATCGCCGG 737 Query 349684 GTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGA 349743 | | || || || | || ||||||||||| || || || || || || ||||| || || Sbjct 738 GCTTAACGTGCTTCGCATCATTAATGAACCGACAGCCGCCGCCATCGCGTATGGCCTCGA 797 Query 349744 TAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGA 349803 || | | ||| | ||| || | || || || || | || ||||| || ||||| Sbjct 798 CAAGAAGGGTGGC---GAACGCAACGTGCTCATCTTCGACCTTGGCGGTGGAACGTTTGA 854 Query 349804 TGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATAC 349863 || || || || ||| | || | || || || ||||| ||||| ||||| ||||| || Sbjct 855 CGTGTCGCTGCTCACAATCGAGGGCGGCATCTTCGAAGTCAAAGCCACTGCCGGTGACAC 914 Query 349864 ACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAA 349923 ||||| ||||| || || ||||| | || || || || ||| || || || Sbjct 915 GCATCTGGGTGGCGAGGACTTTGACAGCCGCCTTGTGGACCACTTTACAGCCGAGTTCAA 974 Query 349924 GCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTG 349982 ||| ||||| | || || | || | | ||| | ||||| || | |||| Sbjct 975 GCG-CAAGCACCGGAAGGACATGACGCACAACCAACGCGCACTCCGTCGTCTGCGCACTG 1033 Query 349983 CGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATT 350042 | || || || || ||||| | | || || | | || | | ||||| || || | Sbjct 1034 CCTGCGAGCGGGCCAAGCGCACACTGTCGTCGTCGGCGCAGGCGTACATTGAGATCGACT 1093 Query 350043 CTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTAT 350102 | || || |||| || ||| || | || || || || || || || || | | Sbjct 1094 CGCTCTTCGACGGCATCGACTTCAACTCGACCATCACGCGCGCGCGCTTCGAGGACCTTT 1153 Query 350103 GTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAA 350162 | || ||| | || ||||| ||||| || || || | ||||| || || Sbjct 1154 GCGCCGACTACTTTCGCAAGACGATGGAGCCTGTCGACAAGGTGCTTAAAGACGCCAAGG 1213 Query 350163 TGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAG 350222 | ||||| ||| | | || || || | |||||||| || || || ||||| || | Sbjct 1214 TTTCCAAGTCGCAGGTGCACGAGGTCGTGCTCGTTGGTGGCTCGACGCGCATTCCCAAGG 1273 Query 350223 TTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAG 350282 | || ||||| || || || ||||| || || || | | | || || || || | Sbjct 1274 TGCAGCAGTTGCTCTCGGACTTTTTCGTCGGGAAGGAGCTGTGCAAGTCCATCAACCCCG 1333 Query 350283 ATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTT 350342 | || || || || | ||||||| |||| ||||| | ||| | || || | | Sbjct 1334 ACGAGGCCGTGGCCTTTGGTGCTACTGTGCAGGCGGCCATTCTCAGCGGCGATGGCACCT 1393 Query 350343 CTA--AAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAA 350399 | | || || | ||| | | || || || || | || ||||| || || | || | Sbjct 1394 CGACCAAGCTGCAAGATTTGCTTCTGCTCGACGTGGCGCCGCTTTCCCTGGGTCTTGAGA 1453 Query 350400 CTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGT 350459 | | || | || ||||| || || || | || | || || || || || |||| Sbjct 1454 CAGCCGGCGGTGTCATGACGACACTCATCCCGCGCAACACGACGGTGCCCACGAAGAAGT 1513 Query 350460 CCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAG 350519 | || || |||||||| | || || || ||||| | || ||| ||||| || |||| Sbjct 1514 CGCAGACGTTTTCTACCTACGCCGACAACCAGCCCGGCGTGCTAATCCAAGTCTTCGAAG 1573 Query 350520 GTGAACG-TGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATT 350578 | || || || | || | || || | || || | || | ||| || || Sbjct 1574 GCGAGCGCAGCATG-ACAACCGACAACCACCTGCTCGGCAAGTTCAACCTCGATGGCATC 1632 Query 350579 CCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGT 350638 ||||| |||||| | || || || ||||| || || | ||||| || ||| | ||||| Sbjct 1633 CCACCCATGCCTCGCGGTGTGCCGCAGATCGATGTGACGTTCGACATCGATGCCAATGGC 1692 Query 350639 ATTTTAAATGTTACCGCAGTTGAAAAATCAA 350669 || | || || | || |||||||| |||| Sbjct 1693 ATCCTCAACGTGTCGGCTGTTGAAAAGTCAA 1723 >seq1706 Length=2458 Score = 156 bits (172), Expect = 1e-32 Identities = 910/1446 (63%), Gaps = 20/1446 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || |||||| | ||||| ||||| || || || | || ||||| || || || || ||| Sbjct 159 GGTATCGATCTCGGTACGACTTACTCGTGCGTCGGCGTGTGGCAGAACGACCGCGTTGAA 218 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || || ||| | || ||||| || || ||||| || || || | Sbjct 219 ATCATCGCCAACGACCAGGGCAACCGCACGACGCCCTCGTATGTTGCCTTCACGGACTCG 278 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| | || |||||| | || || || || | || || || | || ||||| Sbjct 279 GAGCGCCTCATCGGTGATGCCGCCAAGAACCAGGTGGCCATGAACCCCACCAACACGGTG 338 Query 349385 TTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCT 349443 || ||||| ||||| ||||| || | ||||| | ||| | || || | || | Sbjct 339 TTCGATGCCAAGCGTCTTATCGGCCGCAAGTTCAAC-GACCCCGCCACGCAGGCCGACAT 397 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || | ||||| | || || | |||||| || || || ||| || Sbjct 398 CAAGCACTGGCCTTTCAAGGTGACGCCGGGTGCCGGTGACAAGCCCCAGATCACGGTCGA 457 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || ||||| ||||| || || ||||| | | | Sbjct 458 GTTCAAGGGCGAGTCGAAGACG-TTCCAGCCCGAGGAAATCTCGTCGATGGTCCTCATCA 516 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | |||||||| | | || || | | || | || | | || || || || | Sbjct 517 AGATGAAGGAGGTGTCGGAGGCTTTCATTGGCTCGCCGGTGAACAACGCCGTCATCACGG 576 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| ||||| || | ||||| || || || || ||||| ||||| | Sbjct 577 TGCCTGCCTACTTTAACGACTCGCAGCGCCAGGCCACGAAGGACGCTGGTGCGATTGCCG 636 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || || || || ||||| || || || ||||| ||||| |||| Sbjct 637 GCCTCAACGTGCTCCGCATCATCAACGAGCCCACGGCCGCTGCTATTGCCTATGGTCTTG 696 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | || || | || || || ||| | ||||||||||| || | Sbjct 697 ACAAGAAGGGCGGT---GAGCGCAACGTGCTCATCTTCGATCTTGGTGGTGGTACCTTCG 753 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || || | || ||||| ||||| || || || || || |||||||| | Sbjct 754 ATGTGTCGCTCCTCACGATCGAGGAGGGCATTTTCGAGGTGAAGGCCACGGCTGGTGACA 813 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | || |||||||| || || ||||| || || ||||| || || || || | Sbjct 814 CCCACCTTGGTGGTGAGGACTTTGACAACCGCCTCGTCGACCACTTCACGGCTGAGTTCA 873 Query 349923 AGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACT 349981 |||| ||||| | || || | || | | || | || ||||| | ||| Sbjct 874 AGCG-CAAGCACCGCAAGGACATGACGCAGAACCAGCGTGCTCTCCGCCGCCTCCGCACT 932 Query 349982 GCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGAT 350041 || || || || |||||||| | | || || | |||| | | |||||||| || Sbjct 933 GCTTGCGAGCGCGCTAAGCGCACGCTTTCGTCGTCGGCCCAGGCGTACATTGAAATCGAC 992 Query 350042 TCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTA 350101 || || ||| |||| || ||| || | || || |||||||| || || || | Sbjct 993 TCGCTCTTTGACGGCATTGACTTCAACTCGACGATCACGCGTGCTCGTTTCGAGGA--CA 1050 Query 350102 TGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAA 350159 ||| || | | ||| || ||||| || || || || || | || | | Sbjct 1051 TGTGCGGTGACTACTTCCGCAAGACGATGGAGCCCGTCGAGAAGGTCCTCCGCGACTCGA 1110 Query 350160 AAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAA 350219 | | || || | ||| | | || || || | || |||||||| || ||||| || | Sbjct 1111 AGCTCTCGAAGAGCCAGGTCCACGAGGTCGTCCTTGTCGGTGGTTCGACCCGTATCCCCA 1170 Query 350220 AAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATC 350279 | || || ||| | || || || || || || ||||| || || | | || || || | Sbjct 1171 AGGTGCAGCAGCTCCTTTCGGACTTCTTCAACGGCAAGGAGCCGTGCAAGTCGATCAACC 1230 Query 350280 CAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGA 350339 | ||||| || ||||| | ||||| | || ||||| |||| | || || || | Sbjct 1231 CCGATGAGGCCGTTGCCTTCGGTGCCACGGTCCAGGCCGCTATCCTTTCGGGCAACGACT 1290 Query 350340 GTTC---TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAG 350396 || || | | || || | || || ||||| || || || |||||||| | | Sbjct 1291 CGTCGGAGAAGCTCCAGGACCTGCTCCTCCTCGATGTGACGCCTCTGTCGCTTGGCCTTG 1350 Query 350397 AAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAA 350456 | || | || | || ||||| || || | | || | || || || || || | Sbjct 1351 AGACGGCCGGCGGTGTGATGACGACGCTCATCCAGCGCAACACGACGGTGCCCACGAAGA 1410 Query 350457 AGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTG 350516 |||| || || || || || | || || || ||||| | || || || || |||| Sbjct 1411 AGTCGCAGACGTTCTCGACCTACGCGGACAACCAGCCCGGTGTGCTTATCCAGGTGTTTG 1470 Query 350517 AAGGTGAACGTGCTCG--CACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGA 350574 |||| || | ||||| || || || || || || | || | || || Sbjct 1471 AAGGCGA--GCGCTCGATGACCCGCGACAACAACCTCCTCGGCAAGTTCTCGCTTGATGG 1528 Query 350575 AATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAA 350634 || || || ||||| | || || || ||||| || || | ||||| |||||| | || Sbjct 1529 CATCCCGCCCATGCCCCGTGGTGTCCCCCAGATCGATGTAACGTTCGACATTGATGCCAA 1588 Query 350635 TGGTAT 350640 ||||| Sbjct 1589 CGGTAT 1594 >seq1567 Length=70164 Score = 100 bits (110), Expect = 9e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 49799 ACCACCACGAAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 49858 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || || ||||| || || |||||||| || || Sbjct 49859 CAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 49918 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || || || || || ||||| || || || ||||| Sbjct 49919 GATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAAC 49978 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || | || || || ||||||||||| Sbjct 49979 GTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 50026 >seq2332 Length=1913 Score = 86.0 bits (94), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | |||||||||||||||||||||||||| |||| | Sbjct 907 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTGGACCGC 848 Query 74548 TCGGGCA 74554 ||||||| Sbjct 847 TCGGGCA 841 >seq2213 Length=2172 Score = 84.2 bits (92), Expect = 7e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||||||| |||| ||||||| ||| ||||| ||||||| ||||||| |||||| | Sbjct 1981 GGGGGATGTAGCTCAAATGGTAGAGCGCGCGCTTAGCATGCGCGAGGTACAGGGATCGAT 1922 Query 235949 ACCCAGCATCTCCA 235962 |||| || |||||| Sbjct 1921 ACCCTGCTTCTCCA 1908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515194953728786