Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq400 230 3e-55 seq2543 161 1e-34 seq2528 145 8e-30 seq2199 116 4e-21 >seq400 Length=224259 Score = 230 bits (254), Expect = 3e-55 Identities = 405/582 (70%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGT 53238 || ||| || | ||||||| || || | ||||||||| || ||| | | ||| | Sbjct 135696 CCGCAGCATATGATCATGCGTGTTGCTGTCGGTATCCACAAGGAGGACATTGAGGCG-GC 135754 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 | | |||||||| | ||||| || |||||| |||||||| ||||| || || || Sbjct 135755 GCTCAACACGTACGAGTACATGAGTCAGTTGTACTTCACGCACGCGACGCCTACTCTCTT 135814 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 |||||| |||||| || || ||| | ||| |||||||| | || ||| || || Sbjct 135815 CAACGCCGGTACGCCTCGTCCACAGCTCTCGTCGTGCTTCCTTCTCGCCATGCGCGACGA 135874 Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418 ||| || || ||||| ||||| ||||| ||| |||| ||| ||| ||||||||| | || Sbjct 135875 CTCAATTGAGGGCATTTACGATACGCTGAAGCAGTGCGCCTGCATTTCCAAGTGGGCCGG 135934 Query 53419 TGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCA-CACCAATCAAGGGGACG 53476 ||| || ||| || || | | | ||| | ||| ||| | || | || || || ||| Sbjct 135935 TGGCATTGGTGTCAACATTCAC-AACATTCGTTCGACCAACAGCTACATTCGTGGC-ACG 135992 Query 53477 AACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536 |||||| | | | || ||| | || ||||| ||||| |||||| | || || || ||| Sbjct 135993 AACGGCTCCTCTAACGGTATCATTCCCATGCTTCGCGTGTTCAACGATACAGCGCGTTAC 136052 Query 53537 GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 || |||| || ||||| ||||| ||||| || || ||||| ||||| |||||||||||| Sbjct 136053 GTGGACCAAGGCGGTGGTAAGCGGAAGGGCTCTTTTGCCATGTACCTTGAGCCGTGGCAC 136112 Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656 || || ||| | ||||| || || || ||| || || ||||| | ||| Sbjct 136113 GCGGATATTTTCGAGTTCCTTGACCTCAAGAAGAACCACGGCAACGAACTGCACCGCGCG 136172 Query 53657 CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 || ||||| || || ||||||| || || || |||||| | || ||| || Sbjct 136173 CGCGACCTCTTCTATGCCATGTGGATCCCCGATCTGTTCATGAAGCGCGTCGAGTCCAAC 136232 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC 53758 | ||||||| ||| | ||||||||||| ||| || ||| Sbjct 136233 GGGGAGTGGAGCCTCTTTTGCCCGAACGAAGCCCCTGGTCTC 136274 Score = 136 bits (150), Expect = 4e-27 Identities = 319/472 (68%), Gaps = 11/472 (2%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| || || ||||||| ||||| || || ||||| || |||||| | Sbjct 136968 GGCGTGCGCAACTCTCTACTGCTGGCGCCGATGCCCACGGCATCGACAGCCCAGATCCTC 137027 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||||||||||| | ||||||| | |||| ||||||| ||| ||| || || || Sbjct 137028 GGCAACAACGAATCCATCGAGCCATTCACGTCCAACATGTACTCGCGGCGCGTGCTTGCG 137087 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGA-TCAACAAGTG 55656 || || ||| || |||||||| ||||| | ||||| || || | || | || Sbjct 137088 GGCGAATTTACGATCGTCAACAAGTACCTCATGAAGGAACT-CATTTCACTCGGCCTCTG 137146 Query 55657 GAAC-CCGCAGATCAAGACGGATATTGTGCG-GAACGGGGG-GTCCGTCCAGAATCTGGA 55713 || | ||| | || || | || ||| || || || || || ||| | | Sbjct 137147 GAGCGCCGACGTTCGCAACC-AGATCTTGCATGATCGTGGCAGT--GTTCAGGGCGTCGC 137203 Query 55714 ---GATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 ||| || ||| ||||||| |||||| ||||||||||||| | |||||| Sbjct 137204 CACGATCCCCAAGCGCATCAAGGACATTTACAAGACGGTGTGGGAGGTCAAGCAGAAGGT 137263 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 || | ||| || || || || || || | |||| |||||| ||||| ||||| | Sbjct 137264 GGTGCTGGACCTGGCGGCCGACCGAGGCGCCTTCATCTGCCAGTCGCAGTCGATGAACGT 137323 Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAA 55890 ||| | | || || |||| | | |||||||||||||||| ||||||| Sbjct 137324 GCACATCGCCGACCCGAGCGTGAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAGCG 137383 Query 55891 GGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 || |||||||| || |||||||| || ||| | ||| |||||||| | ||| Sbjct 137384 CGGTCTCAAGACCGGCATGTACTACCTCCGGTCGCGCCCCAAGGCCGATGCG 137435 >seq2543 Length=13544 Score = 161 bits (178), Expect = 1e-34 Identities = 209/289 (72%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||||||||||||| || | || || || || ||||| || || ||||| ||||||| Sbjct 4843 GCGTGAAGATGTACCGCGGACTTGCGGCGTCTTTGCCGCCCTGTAGTCGCGTACCAAACT 4784 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || || | | ||| ||||||||||||||| ||| | | || |||| || | Sbjct 4783 GCCCCGACGGGTACAAGAGCGGGAGGTTGTTGGCGCCAACGTAGTCTTGGGCCATGTTGA 4724 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 | || |||| |||| ||||||||||||||| |||||||| ||||| ||| ||| | Sbjct 4723 CGATTGTGCTGTGCAACGACGCTTCACCGTGGTGGTACGCCGTATGCTCGGCGCAGTAGC 4664 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 |||| | ||||||||| || | ||| |||| || ||| |||| || || | | || Sbjct 4663 CCGCGAGCTGCGCCACTTTGACCTCCTTCGTGAGCTTCCGTTTGAAGCACGCAAAGAGCA 4604 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 | || | |||||| || || | |||||||| || ||| |||||||| Sbjct 4603 CTTTCCTCTGGGACGGCTTGAGTCCGTCCACGGCGCTAGGGATCGAACG 4555 Score = 147 bits (162), Expect = 2e-30 Identities = 301/443 (68%), Gaps = 6/443 (1%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || || || || | || |||| || | ||| |||| || || |||||| || Sbjct 4994 CCCGTGCCAATGCCTTCGGTGCCGTTCACAAGCAGCATGGGCAGGATGGGCACGTAGTAC 4935 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--CTCG 117269 ||||| || || | |||||||| |||||||| |||| || | ||| |||| Sbjct 4934 GTTGGCTCGACGGGCTGGCCGTCGTCGTGGACGTACTGCAGCAGCGGTTCGTCGGCCTCG 4875 Query 117270 GA-TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCA 117328 | | | | | | || | |||| ||| | ||||| ||||| || | ||||| Sbjct 4874 GGGTACACCAGGCGCGTGTACTT--GTGC-AGGTGCGTGAAGATGTACCGCGGACTTGCG 4818 Query 117329 GCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGG 117388 || || ||||| || || |||||||| || || || ||| | |||||| ||| Sbjct 4817 GCGTCTTTGCCGCCCTGTAGTCGCGTACCAAACTGCCCCGACGGGTACAAGAGCGGGAGG 4758 Query 117389 TTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCA 117448 ||||||||||| || ||| ||| |||| |||||| || || | || | ||| ||| Sbjct 4757 TTGTTGGCGCCAACGTAGTCTTGGGCCATGTTGACGATTGTGCTGTGCAACGACGCTTCA 4698 Query 117449 CCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCT 117508 || ||||| |||||||| ||||| || ||||||||| ||||| ||||| || | || Sbjct 4697 CCGTGGTGGTACGCCGTATGCTCGGCGCAGTAGCCCGCGAGCTGCGCCACTTTGACCTCC 4638 Query 117509 GACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCA 117568 ||| || ||| |||| ||| ||| | | ||| || | ||| ||||| || || Sbjct 4637 TTCGTGAGCTTCCGTTTGAAGCACGCAAAGAGCACTTTCCTCTGGGACGGCTTGAGTCCG 4578 Query 117569 TCCGCCACGTGAGGGATCGAACG 117591 ||| | || |||||||||||| Sbjct 4577 TCCACGGCGCTAGGGATCGAACG 4555 Score = 129 bits (142), Expect = 6e-25 Identities = 161/219 (74%), Gaps = 9/219 (4%) Strand=Plus/Minus Query 118171 GGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCC 118230 |||||| || |||||| | ||| |||||||| |||||||| ||| | || ||||| Sbjct 3898 GGCGTCACGGACGTTGAGGAACTTTCCCCGCAGAGGAAACACCCCATAGGCATCGCGGCC 3839 Query 118231 CACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAG 118290 || ||| |||||| || | || || ||||| |||||||| ||||| || | ||| || Sbjct 3838 GACGACGGACAAGCCCGCGACGGCCAGCGCCTTGGCCGAGTCGCCCTCCGTGAGAATCAG 3779 Query 118291 AGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTTCGGAACGCC 118350 |||||||||| | ||| ||| |||||||||||||| || || ||||| |||||| | Sbjct 3778 CGTGCACTCGGCGGCGCGCTGACCTCCGGCCCAATTAGCGTCTTCGAGCTTGGGAACGGC 3719 Query 118351 CGTAATGCGCGACTTTTTGGACCCATCTGTCTTCTTGAG 118389 | |||||||||| ||| || |||| ||||| Sbjct 3718 ------GACAGACTTTTTGG--CCA-CTTTCTTGTTGAG 3689 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTC 119133 |||||| | ||||| |||||||||||||| |||| |||||||| || | ||| ||| Sbjct 2953 ACTGAAGATGTTGGTAAGCTTGGCACCGTAACCGTGGCGACCACCCGTGAGGCG-TGCCG 2895 Query 119134 CT-CGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGA 119186 | |||||||| ||||||||| ||| | |||||| |||| | ||| || |||| Sbjct 2894 ATGCGTCGTTGAAGTTGGAGCCGGTGAGAAGGTGGCCAAGCACGAGTTCTGGGA 2841 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 153840 ACTGAAAACGTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACGCGTTGTTC 153899 |||||| | ||| | | ||||||||||||||| | |||||| ||||| | |||| Sbjct 2953 ACTGAAGATGTTGGTAAGCTTGGCACCGTAACCGTGGCGACCACCCGTGAGGCGTGCCGA 2894 Query 153900 CTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGTTCAGGGA 153952 |||||||| ||||||||| ||| | |||||| |||| | |||||| |||| Sbjct 2893 TGCGTCGTTGAAGTTGGAGCCGGTGAGAAGGTGGCCAAGCACGAGTTCTGGGA 2841 >seq2528 Length=14935 Score = 145 bits (160), Expect = 8e-30 Identities = 338/504 (67%), Gaps = 7/504 (1%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 ||||||||||| | ||| ||||| || || |||||||| | ||| ||||||| ||| Sbjct 5119 TCATTCGAAAAGCTCAAGCCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGCAG 5178 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTT--GCGCGA 74907 ||||| ||| |||||| |||||||||||| || ||||| || | ||||| ||| | Sbjct 5179 AAGGAGCCAGAGAAGAAAATGCCTTCGACAGCAGCGAAGGCAACGATGCGTTCGGCGTAA 5238 Query 74908 ACGGTGCATCGGAAGT--CATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 | | | | || || || ||| | | ||||| | || || || | ||| || Sbjct 5239 GCAGCGATTTGGTTGTTGCA-CCACTTGAGCGCCCACTGGGCCTTGCGCTGGACACACGG 5297 Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTC 75025 || || ||||| || ||| | || ||||||| | | ||||||| | | |||| Sbjct 5298 GATCGTGTCGATGGCGCGGAGCACGCGGTCCTTCTCAACCGTGTCCTTGATGTACGTGTC 5357 Query 75026 AATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGA 75084 ||| | || ||||| || || || || || | | ||| ||| | | |||| Sbjct 5358 AATAAGTAGCGAGTAGACTTCGGAGTGGATGTTTTCAAT-AGCGATCTGAAAGCCATAGA 5416 Query 75085 AAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGA 75144 | | || || || | | ||| || || || || || |||||| | | ||||| | | Sbjct 5417 AGCAACGAGCTTCAGGCACCTGAACTTCGTTGGAGAAGTTCATGGCCAAGTTCTCATTTA 5476 Query 75145 CGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204 | |||||||| || |||||||| || || || || |||| ||| |||||| | || Sbjct 5477 CAATGCCGTCAGACGCGGCGAAGAACGCAAGCACGTGCGTGATGAAGAAGCGCTCGTTGT 5536 Query 75205 CAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGA 75264 | ||||| || ||||| |||||||| || | | ||| | || ||| | ||||||| Sbjct 5537 CCGTGAGCTTCTCCCAGTCCTTCAGATCGTGGACGAGATCGAGTTCTTCGGCTGTCCAGA 5596 Query 75265 AACTCCCAATCGCCTTTTTGTACA 75288 | ||| | ||||| ||||||| Sbjct 5597 AGCTCGCCTCGGCCTTCTTGTACA 5620 >seq2199 Length=144029 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| | |||||||| || || || |||||||| || ||| ||||| |||||||| Sbjct 60050 GTGAAGACGTAACGAGCACTAGCCGCGTCCTTGCCTCCCTTAAGCCGCGTGCCGAATTGC 59991 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | || | | || |||||||||| ||| ||||||| ||| |||| ||||| Sbjct 59990 CCGTTGGGAGAGAGCAAGTGCAGGTTGTTGCTGCCGACAAAGTCTTGGGCCATGTTGATG 59931 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || || || || || || ||||| || |||| || || | ||||| ||| Sbjct 59930 ATCGTGCCGTGCAGCGATGCTTCGCCGTGGTGGTATGCCGAGTGTTCTGAGACGTACCCC 59871 Query 117485 GCCAGCTGAGCCACCTTCATGTCT 117508 |||||||| || ||||| || ||| Sbjct 59870 GCCAGCTGCGCAACCTTGATCTCT 59847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195055307600