Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2606 129 5e-25 seq1051 125 6e-24 seq880 123 2e-23 seq389 116 3e-21 seq1567 107 2e-18 >seq2606 Length=15791 Score = 129 bits (142), Expect = 5e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || ||| |||| || ||| | || || || || || || || | Sbjct 3368 CCATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACGCTCGACGTCGAGCCTT 3427 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | |||||||| || | ||||| || || || || ||||| || ||||| || || |||| Sbjct 3428 CGGACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATC 3487 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||||||||| || | || ||| || ||| |||| || |||| Sbjct 3488 AGCAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTTCGGACTACA 3547 Query 27166 ACATTCAAAAGGAGTCGAC 27184 |||| || ||||||||||| Sbjct 3548 ACATCCAGAAGGAGTCGAC 3566 >seq1051 Length=134064 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || ||||| |||||| | || || || || || || |||| Sbjct 119728 CCATGCAAATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCGT 119787 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||||| ||||| | || || || || || || ||||| || ||||| || || |||| Sbjct 119788 CGGACTCCATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATC 119847 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||||||||| || | || ||| | ||| | || || |||| Sbjct 119848 AGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACA 119907 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || ||||||||||| | || | || | || |||| |||||||| Sbjct 119908 ACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGGCAT 119959 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || || || ||||| Sbjct 119957 CATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCGTC 120016 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||| | || || || || || || ||||| || ||||| || || ||||| Sbjct 120017 GGACTCCATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCA 120076 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || | || ||| | ||| | || || ||||| Sbjct 120077 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAA 120136 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 120137 CATCCAGAAGGAGTCGAC 120154 >seq880 Length=46309 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || || || ||||| || || Sbjct 27235 CATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCTC 27176 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||||| | ||||| || || || || ||||| || || || || || ||||| Sbjct 27175 GGACTCGATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCA 27116 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || | || ||| | ||| | || || ||||| Sbjct 27115 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAA 27056 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 27055 CATCCAGAAGGAGTCGAC 27038 >seq389 Length=167588 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || || ||||||||| | || || || || || || |||| Sbjct 110549 CCATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACGCTCGACGTCGAGCCGT 110490 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||||||||||||| | ||||| || || || || ||||| || ||||| || || || | Sbjct 110489 CCGACTCGATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACC 110430 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | |||||||| || | || ||| | || | ||| |||| Sbjct 110429 AGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACA 110370 Query 27166 ACATTCAAAAGGAGTCGAC 27184 |||| || ||||||||||| Sbjct 110369 ACATCCAGAAGGAGTCGAC 110351 >seq1567 Length=70164 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| |||||| | || || || || || || || || Sbjct 50026 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACGCTCGACGTTGAGCCCTCG 49967 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| || || || || ||||| || ||||| || || ||||| Sbjct 49966 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 49907 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || || | || | ||| |||||| Sbjct 49906 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGAGCGACTACAAC 49847 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 49846 ATCCAGAAGGAGTCGAC 49830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434901753498240