Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2606 176 1e-38 seq1567 167 5e-36 seq1051 167 5e-36 seq880 161 2e-34 seq389 154 3e-32 >seq2606 Length=15791 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| || ||||| || |||||||| || |||| |||||| | || || Sbjct 3581 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCC 3522 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || || || || || | || ||||||||| Sbjct 3521 TCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 3462 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| ||||| | ||| || || || ||||| ||||| ||| Sbjct 3461 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGCGTGATGGTC 3402 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | |||||| || || | |||||| Sbjct 3401 TTACCCGTCAAAGTCTTGACGAAGATCTGCAT 3370 >seq1567 Length=70164 Score = 167 bits (184), Expect = 5e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| || || ||||| || |||||||| || || || || Sbjct 49805 ACGAAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 49864 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| |||||||| ||||| || || || || || | || Sbjct 49865 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCC 49924 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || ||||| ||||| | ||| ||| ||||| ||||| Sbjct 49925 CTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAG 49984 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| || || | |||||| || || | |||||| || Sbjct 49985 CGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCATATT 50029 >seq1051 Length=134064 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| ||||| | || || Sbjct 120169 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 120110 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || || || || |||| || ||||||||| Sbjct 120109 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 120050 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| || |||| ||| || || || ||||| ||||| ||| Sbjct 120049 TGGATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTC 119990 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 119989 TTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 119958 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| ||||| | || || Sbjct 119941 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 119882 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || || || || |||| || ||||||||| Sbjct 119881 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 119822 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| || |||| ||| || || || ||||| ||||| ||| Sbjct 119821 TGGATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTC 119762 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | ||||| Sbjct 119761 TTGCCCGTCAGCGTCTTGACGAAGATTTGCAT 119730 >seq880 Length=46309 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| || |||||||| || |||| ||||| | || || Sbjct 27023 AGCACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 27082 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || || || || || | || ||||||||| Sbjct 27083 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATACCCTCCTTGTCC 27142 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| || || | ||| ||| || || ||||| ||||| ||| Sbjct 27143 TGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAGGGCTCCACGTCGAGCGTGATGGTC 27202 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 27203 TTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 27234 >seq389 Length=167588 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||||| ||||| || || ||||| || |||||||| || || || Sbjct 110323 TCCACGAAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAG 110382 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || || ||||||||||| || ||||| ||||| || ||||| || |||| Sbjct 110383 CGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGAAT 110442 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || || ||||| || || | ||| || || || || Sbjct 110443 GCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCGGACGGCTCGACGTC 110502 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||||||||| || ||||| ||||| || || | ||||| Sbjct 110503 GAGCGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 110547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159106524293630