Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq389 113 4e-20 seq1051 91.5 1e-13 >seq389 Length=167588 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||| || || || |||| |||||||| Sbjct 110345 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGC 110404 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || || ||||||||||| | ||| | || ||| |||||| ||| ||| Sbjct 110405 TTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 110464 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || |||| ||| | | | || ||| || ||| ||||| | |||||| | || || || Sbjct 110465 TGCTTGA-CGTTGTCAATCGAGTCGGACGGCTCGACGTCGAGCGTGATCGTCTTGCCGGT 110523 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||||||||| Sbjct 110524 GAGCGTCTTGACGAAGATTTGCAT 110547 >seq1051 Length=134064 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || ||||| ||| || || || || || || | || || || | Sbjct 119945 GCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCC 119886 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || |||||||| || | ||| | || ||| || Sbjct 119885 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTT 119826 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTA-TCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||||| || | ||| | || | | || || ||| || || | |||| Sbjct 119825 GTCCTGGATCTTCTGCTTCA-CGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGA 119767 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || ||||||||||| || || ||||||||||| Sbjct 119766 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATTTGCAT 119730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || ||||| ||| || || || || || || | || || || | Sbjct 120173 GCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCC 120114 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || |||||||| || | ||| | || ||| || Sbjct 120113 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTT 120054 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTA-TCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||||| || | ||| | || | | || || ||| || || | |||| Sbjct 120053 GTCCTGGATCTTCTGCTTCA-CGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGA 119995 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || ||||||||||| || || ||||| ||||| Sbjct 119994 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 119958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429529570163606