Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2528 93.3 6e-14 >seq2528 Length=14935 Score = 93.3 bits (102), Expect = 6e-14 Identities = 373/585 (64%), Gaps = 7/585 (1%) Strand=Plus/Plus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| | || || || || || ||||| ||||| || | || | || || |||| Sbjct 5069 ACATGAGGCAGGCGAAGTCGCAGTGAAGGCCTTCGTCGCGCGAGATGAGCTCATTCGAAA 5128 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | | | || ||||| || || || || |||||||| || || | ||| || |||| Sbjct 5129 AGCTCAAGCCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAG 5188 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---TT 48309 | ||||| |||||||| || || || || || | | || ||||| || || Sbjct 5189 AGAAGAAAATGCCTTCGACAGCAGCGAAGGCAACGATGCGTTCGGCGTAAGCAGCGATTT 5248 Query 48310 CGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 ||||| |||| | ||||| | ||||| || ||||| || || || || | Sbjct 5249 GGTTGTTGCACCACTTGAGCGCCCACTGGGCCTTGCGCTGGACACACGGGATCGTGTCGA 5308 Query 48370 TAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGAC 48429 | || | | || || ||| | || || | ||| || || || | || Sbjct 5309 TGGCGCGGAGCACGCGGTCCTTCTCAACCGTGTCCTTGATGTACGTGTCAATAAGTAGCG 5368 Query 48430 TATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTT 48489 || | ||||||||| || |||||||| || |||||||| || || || || | |||| Sbjct 5369 AGTAGACTTCGGAGTGGATGTTTTCAATAGCGATCTGAAAGCCATAGAAGCAACGAGCTT 5428 Query 48490 CTGTGATCTGTACCTCCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATC 48547 | | | ||| || || | | || ||||| ||||| ||||||||||| || || || Sbjct 5429 CAGGCACCTGAACTTCGTTGGAGAA--GTTCATGGCCAAGTTCTCATTTACAATGCCGTC 5486 Query 48548 ACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 | || || || || || | || || | || || | |||||| || || || Sbjct 5487 AGACGCGGCGAAGAACGCAAGCACGTGCGTGATGAAGAAGCGCTCGTTGTCCGTGAGCTT 5546 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 | |||||| || | ||| | | ||| | |||||| |||||||| || ||||| Sbjct 5547 CTCCCAGTCCTTCAGATCGTGGACGAGATCGAGTTCTTCGGCTGTCCAGAAGCTCGCCTC 5606 Query 48668 TGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAA 48712 || || || ||||| | ||| | ||| | ||||| ||||| Sbjct 5607 GGCCTTCTTGTACATTTCCCACACATCCGCATGCTGGATCGGGAA 5651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694642211551680