Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2606 190 4e-43 seq1567 168 1e-36 seq880 168 1e-36 seq1051 156 9e-33 seq389 152 1e-31 seq2872 138 2e-27 seq779 123 5e-23 seq1173 91.5 3e-13 seq2199 89.7 1e-12 seq1239 89.7 1e-12 seq978 86.0 1e-11 >seq2606 Length=15791 Score = 190 bits (210), Expect = 4e-43 Identities = 181/229 (79%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||||||||| || || || | ||| || || |||||||||||||| | Sbjct 3597 ACCACCACGCAGGCGAAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 3538 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || ||||| || || || ||||| ||||| | || || || || || Sbjct 3537 AAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 3478 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||||| ||| | ||||| | |||||||| |||| Sbjct 3477 GATGCCCTCCTTGTCCTGGATCTTCTGCTTG-ACGTTGTCGATCGAGTCCGAAGGCTCGA 3419 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| |||||||||||||||||||| ||||| |||||||| Sbjct 3418 CGTCGAGCGTGATGGTCTTACCCGTCAAAGTCTTGACGAAGATCTGCAT 3370 >seq1567 Length=70164 Score = 168 bits (186), Expect = 1e-36 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || |||||||||||||| Sbjct 49799 ACCACCACGAAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 49858 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || ||||| ||||| | || || || || || Sbjct 49859 CAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 49918 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||| || ||| | ||||| | |||||| | || | Sbjct 49919 GATGCCCTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCGATCGAGTCCGAGGGCTCAA 49977 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||||| ||||| ||||| || ||||||||||| ||||| |||||||| || Sbjct 49978 CGTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCATATT 50029 >seq880 Length=46309 Score = 168 bits (186), Expect = 1e-36 Identities = 187/246 (76%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 27007 ACCACCACGCAGGCGGAGCACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 27066 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||| | || || || || || Sbjct 27067 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 27126 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||| |||||||| ||| || ||| | || || | |||||| | || | Sbjct 27127 GATACCCTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCAATCGAGTCCGAGGGCTCCA 27185 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA--TATA 283108 | ||||| ||||| ||||| |||||||| ||||| ||||| |||||||| ||| | || Sbjct 27186 CGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATGATCAATTCTA 27245 Query 283109 CAAATA 283114 || ||| Sbjct 27246 CACATA 27251 >seq1051 Length=134064 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | ||| || || |||||||||||||| | Sbjct 119956 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 119897 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||| | || || || || ||| Sbjct 119896 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGA 119837 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | || || | |||||| | ||||| Sbjct 119836 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTGTCAATGGAGTCCGACGGCTCGAC 119778 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 119777 ATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATTTGCAT 119730 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| ||||| || || || || | ||| || || |||||||||||||| | Sbjct 120184 CCGCCACGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 120125 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||| | || || || || ||| Sbjct 120124 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGA 120065 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | || || | |||||| | ||||| Sbjct 120064 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTGTCAATGGAGTCCGACGGCTCGAC 120006 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 120005 ATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 119958 >seq389 Length=167588 Score = 152 bits (168), Expect = 1e-31 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| ||||| || || || || | ||| || || |||||||||||||| Sbjct 110321 CCTCCACGAAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 110380 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||||||||| | || || ||||| ||| Sbjct 110381 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGA 110440 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | || || | ||| || | ||||| Sbjct 110441 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCAATCGAGTCGGACGGCTCGAC 110499 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || || | ||||| ||||| || ||||| Sbjct 110500 GTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 110547 >seq2872 Length=3431 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 316986 GAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTG 317045 ||||| ||||| || || | || || || ||||| | |||||| || || | ||| Sbjct 1504 GAGGTTGTGCTCGACGTAGACCGTCTTGAGCTCGTCCTTAGACGGGAAGCCCTCGAGCTG 1445 Query 317046 ACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACC 317105 ||||| |||| || | ||| || ||||||||||| ||| ||||||||||| ||||| Sbjct 1444 GCCGTTGGCAATGGCGCGCATGAGCGTCGACTTGCCGCAACCGTTGGGGCCGCAGAGACC 1385 Query 317106 ATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATA 317165 || || | |||||||| || || | |||| |||||| || || ||| | ||||| || Sbjct 1384 GTAGCGGTGGCCCTTCTTGAGGTTCATGCGGGCGTTGTTGAGGAGGATCATGCCACCGTA 1325 Query 317166 TGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 || || |||||||| || || || ||||||||||| Sbjct 1324 CGCGAGGGAGAACTCGCAGTCGCAGAGGTCCTCGCC 1289 Score = 125 bits (138), Expect = 1e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220 ||| ||||| || ||||| ||||||| ||||||||||| |||| || |||||||| Sbjct 2323 TTCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCAAG 2264 Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280 || | ||| |||||||||||||||||||| |||||||| || | |||||| || || Sbjct 2263 GTGCTGCTCAATGTGGTGGAAAGCGTGCTGGGCCACGTACGCGAAACGCATGGCCGGGTG 2204 Query 316281 CTTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCA 316324 |||||| ||| |||| | || | |||| ||| || || |||| Sbjct 2203 CTTCCAGACGGTACCCGTGGTGGGTTCCGTCTCGCCCGTAAGCA 2160 >seq779 Length=3608 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 316986 GAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTG 317045 ||||| ||||| || || | || || || ||||| | |||||| || || | ||| Sbjct 2035 GAGGTTGTGCTCGACGTAGACCGTCTTGAGCTCGTCCTTGGACGGGAAGCCCTCGAGCTG 2094 Query 317046 ACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACC 317105 ||||| |||| || | ||| || ||||||||||| ||| ||| | ||||| ||||| Sbjct 2095 GCCGTTGGCAATGGCGCGCATGAGCGTCGACTTGCCGCAACCGTTGCGACCGCAGAGACC 2154 Query 317106 ATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATA 317165 || || | |||||||| || || | || | |||||||| || ||| | ||||| || Sbjct 2155 GTAGCGGTGACCCTTCTTGAGGTTGAGGCGAGCATTGTTCAGGAGGATCATGCCACCGTA 2214 Query 317166 TGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 || || |||||||| || || || ||||||||||| Sbjct 2215 CGCGAGGGAGAACTCGCAGTCGCAGAGGTCCTCGCC 2250 Score = 111 bits (122), Expect = 3e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220 ||| ||||| || ||||| ||||||| ||||||||||| |||| || ||||| || Sbjct 1216 TTCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCCAG 1275 Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280 || | ||| || ||||||||||||||||| |||||||| || | |||||| || || Sbjct 1276 GTGCTGCTCAATATGGTGGAAAGCGTGCTGGGCCACGTACGCGAAACGCATGGCCGGGTG 1335 Query 316281 CTTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCA 316324 |||||||| |||| | || | |||| ||| || || |||| Sbjct 1336 CTTCCAAAGCGTACCCGTGGTGGGTTCCGTCTCGCCCGTGAGCA 1379 >seq1173 Length=79924 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/171 (72%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 312485 GCGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATC 312544 ||| ||||||||||| ||||||| || || | ||||| |||| || || || ||| || Sbjct 72473 GCGGCCCCACTTGACGGCGTTGACGATCGATTTGAAGTTGTCGTCCATGAGAATGATGTC 72414 Query 312545 GGCTGCTTCCTTTGCAATGTCTGTACCAC---TCCCCATTGCACACCCGACGTCTGCTTC 312601 || || ||||| | | | |||| || | | ||||| ||| | ||||||| || | Sbjct 72413 GGACGCGTCCTTGGAGACGGCTGTGCCGCAGATGCCCATGGCAAAGCCGACGTTGGCCTT 72354 Query 312602 CTTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTG 312652 ||| || ||||| |||||||||| || ||||| || || ||||| || Sbjct 72353 CTTGAGCGCCGGTGCGTCGTTAGTGCCGTCGCCTGTCACGGCCACGACCTG 72303 >seq2199 Length=144029 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||| |||||||| | ||| | ||||| || ||||||||| || | |||| || || Sbjct 60057 CAGCTTCGTGAAGACGTAACGAGCACTAGCCGCGTCCTTGCCTCCCTTAAGCCGCGTGCC 59998 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCAT 273892 || || || | ||| ||| ||| | ||||||||| ||||| | || || ||||| Sbjct 59997 GAATTGCCCGTTGGGAGAGAGCAAGTGCAGGTTGTTGCTGCCGACAAAGTCTTGGGCCAT 59938 Query 273893 ATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGAT 273952 || | ||| || || || || ||| | ||||||||||| || || |||||| | || Sbjct 59937 GTTGATGATCGTGCCGTGCAGCGATGCTTCGCCGTGGTGGTATGCCGAGTGTTCTGAGAC 59878 Query 273953 ATAACCACTGAACTGAGCAACCTT 273976 || || | ||| |||||||| Sbjct 59877 GTACCCCGCCAGCTGCGCAACCTT 59854 >seq1239 Length=33317 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 312485 GCGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATC 312544 ||| ||||||||||| |||| || || |||| ||||| |||| || || || ||| || Sbjct 52 GCGGCCCCACTTGACGGCGTTCACGATCGACTTGAAGTTGTCGTCCATGAGAATGATGTC 111 Query 312545 GGCTGCTTCCTTTGCAATGTCTGTACCAC---TCCCCATTGCACACCCGACGTCTGCTTC 312601 || || ||||| || | | | || || | | ||||| ||| | || ||||| || | Sbjct 112 GGACGCGTCCTTGGCGACGGCCGTGCCGCAGATGCCCATCGCAAAGCCCACGTCCGCCTT 171 Query 312602 CTTAAGAGCCGGGGCGTCGTTAGCACCATCGCC 312634 ||| || ||||| |||||||| | ||| ||||| Sbjct 172 CTTCAGCGCCGGCGCGTCGTTGGTACCGTCGCC 204 >seq978 Length=4041 Score = 86.0 bits (94), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 312485 GCGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATC 312544 ||| ||||||||||| | || ||||| |||| ||||| |||| || || | ||| || Sbjct 1312 GCGGCCCCACTTGACGGCATTAACAATCGACTTGAAGTTGTCGTCCATGAGGATGATGTC 1371 Query 312545 GGCTGCTTCCTTTGCAATGTCTGTACCAC---TCCCCATTGCACACCCGACGTCTGCTTC 312601 || || ||||| || | | | ||||||| | ||||| ||| | || || ||||| | Sbjct 1372 GGACGCGTCCTTGGCGACGGCCGTACCACAGATGCCCATGGCAAAGCCCACATCTGCCTT 1431 Query 312602 CTTAAGAGCCGGGGCGTCGTTAGCACCATCGCC 312634 ||| || ||||| ||||| || | || ||||| Sbjct 1432 CTTGAGCGCCGGTGCGTCATTGGTGCCGTCGCC 1464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046698134458548