Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1051 178 1e-39 seq880 154 1e-32 seq389 147 2e-30 seq2606 145 7e-30 seq1567 132 4e-26 >seq1051 Length=134064 Score = 178 bits (196), Expect = 1e-39 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | ||| || || ||||| ||||||||| ||||| ||||| || Sbjct 120185 GCCGCCACGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 120126 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| |||||||||||||||||||| || |||||||| || |||| ||| Sbjct 120125 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 120066 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| || |||||| ||| | | | | ||| || ||| | Sbjct 120065 AATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTGTCAATGGAGTCCGACGGCTCGA 120007 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || |||||||||||||| ||||| ||||||||| Sbjct 120006 CATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 119957 Score = 176 bits (194), Expect = 4e-39 Identities = 182/236 (77%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || || ||||| ||||||||| ||||| ||||| || Sbjct 119957 GCCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 119898 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| |||||||||||||||||||| || |||||||| || |||| ||| Sbjct 119897 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 119838 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| || |||||| ||| | | | | ||| || ||| | Sbjct 119837 AATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTGTCAATGGAGTCCGACGGCTCGA 119779 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 | || | || || || || |||||||||||||| ||||| || |||||| | ||| Sbjct 119778 CATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATTTGCATGGTTTCG 119723 >seq880 Length=46309 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || || ||||| ||||||||| ||||| ||||| Sbjct 27005 CCACCACCACGCAGGCGGAGCACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCC 27064 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||||||||||| |||| |||||||||||||||||||| || |||||||| || |||| | Sbjct 27065 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGG 27124 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 || | | |||||||||| ||| || ||||| ||| | | | | ||| | ||| Sbjct 27125 GGGATACCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCAATCGAGTCCGAGGGCTC 27183 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| || | ||| || || || ||||||| ||||| ||||| ||||||||| Sbjct 27184 CACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATG 27235 >seq389 Length=167588 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || || ||||| ||||||||| ||||| |||||| Sbjct 110320 GCCTCCACGAAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 110379 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || |||||||||||||| || || |||||||| ||||||| ||| Sbjct 110380 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGG 110439 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| || ||||| ||| | | | | |||| || ||| | Sbjct 110440 AATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCAATCGAGTCGGACGGCTCGA 110498 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| ||||| || || || |||||||| ||||| || |||||| Sbjct 110499 CGTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCATG 110548 >seq2606 Length=15791 Score = 145 bits (160), Expect = 7e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | || || || ||||| ||||||||| ||||| ||||| Sbjct 3599 CCACCACCACGCAGGCGAAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCC 3540 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| |||| || ||||||||||||||||| || |||||||| || |||| | Sbjct 3539 GAAAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGG 3480 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 || | || |||||||||| ||| || ||||| ||| | | | | ||| | ||| Sbjct 3479 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATCGAGTCCGAAGGCTC 3421 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | ||| || || |||||||||| ||||| ||||| ||||||||| Sbjct 3420 GACGTCGAGCGTGATGGTCTTACCCGTCAAAGTCTTGACGAAGATCTGCATG 3369 >seq1567 Length=70164 Score = 132 bits (146), Expect = 4e-26 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || || | || || || ||||| ||||||||| ||||| ||||| Sbjct 49796 ACCACCACCACGAAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTC 49855 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | || ||||| | || |||||||||||||||||||| || |||||||| || |||| Sbjct 49856 GCTCAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGG 49915 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 ||| | || |||||||||| ||| || ||||| ||| | | | | ||| | || Sbjct 49916 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATCGAGTCCGAGGGCT 49974 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || | ||| || || || || |||| ||||| |||||||||||||| || Sbjct 49975 CAACGTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCATATT 50029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462286305314400