Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6453 262 4e-65 >seq6453 Length=80198 Score = 262 bits (290), Expect = 4e-65 Identities = 596/878 (68%), Gaps = 24/878 (3%) Strand=Plus/Minus Query 15917 TAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATA 15976 || || | ||||||||| || || ||||| |||||||| | | ||| || | ||||| Sbjct 49530 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCATC 49471 Query 15977 AAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCC-GTAACTAATCT 16035 | ||||||||||||| ||| | ||| ||| | || ||| | ||||| |||| Sbjct 49470 CAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAAC-AATCG 49412 Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG-TCGTA 16094 ||| || ||||| || || ||||||| ||| || |||| ||||| || || ||| | Sbjct 49411 ATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCG-A 49353 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | ||||| | | | || ||||| |||||| || | ||| || || |||||| | Sbjct 49352 CTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCA- 49294 Query 16155 TGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAA---CATTAGACACGCGAAG 16210 || | | | ||| | | ||| ||| |||| | ||| ||||| || ||| Sbjct 49293 TGAATAGAGCCTTCTGGAAGCTTAT---TTACCAGTTTCGAGTACATCAGACATGCAAAG 49237 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 || |||||||||||||| || | ||||| || || || ||||| | || ||||| Sbjct 49236 TCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATC 49177 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATATACCCTC 16329 |||||||||||| | ||| ||||| | |||| ||||| || || || || || || || Sbjct 49176 AATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTTC 49118 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCAT-CTTTATTACGAATCCATT 16388 || | ||||| || | | || ||| || ||| |||| |||| || | ||||| Sbjct 49117 GACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA-CCATT 49059 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448 || |||||| ||||| | | | || || ||||| || || | || | Sbjct 49058 TCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAGTAAAT 48999 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 || |||||| ||| | || || |||||||||| ||| |||| ||| |||| Sbjct 48998 GCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGT 48939 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568 |||| || ||||| || || || |||||||| ||||||||||| |||| ||||| || | Sbjct 48938 GTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGAACCT 48879 Query 16569 C-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 | | | |||| | || || || ||||| || || || ||||| || ||||| || Sbjct 48878 CACTGCTGAAATTCAT-GGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAAGAAG 48820 Query 16628 GCCAATATGTGCTTAATGAAATATTTTTC---GTCAGATGTAAGAATATGCCAATCTTTT 16684 ||||| | ||| || || || | | | || ||| ||| | | || |||| || || Sbjct 48819 GCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGAT---ATATTAAGCCAGTCATTC 48763 Query 16685 AAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATAC 16744 | || | | ||| | |||||||| ||||||||||| ||| |||| || |||||| Sbjct 48762 ATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATAC 48703 Query 16745 ATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 || | |||||| ||| | |||||| ||||||| ||| Sbjct 48702 ATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGAC 48665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511343230293560