Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6453 122 9e-23 seq546 91.5 2e-13 seq8657 86.0 6e-12 >seq6453 Length=80198 Score = 122 bits (134), Expect = 9e-23 Identities = 315/473 (67%), Gaps = 8/473 (2%) Strand=Plus/Plus Query 116729 GACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATC 116788 ||||| ||| | || || ||||| |||||| ||||||| || || ||||| || || || Sbjct 48785 GACAATGAGAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGGATT 48844 Query 116789 GTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTG 116847 || || || ||||| | | | |||| ||| ||||| || | | || || || || Sbjct 48845 GTTAATGAAAATCTCGCCATGAATTTCAG-CAGTGAGGTTCAAATCCCGGAAGCTCGATG 48903 Query 116848 CTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCAT 116907 ||| || || || || || || || || || | ||||||||| |||||||| | || Sbjct 48904 CTTTTATGGATTCCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGAT 48963 Query 116908 CGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGAT 116967 || || ||| | | | || || | | ||| | ||| || || || || Sbjct 48964 TGATACATACATCAAAGATCCAACCGAAAAACAGCATTTACTATGCGCGATTGAAACAAT 49023 Query 116968 GCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCG 117026 |||||||| | | || || | |||||| || ||| || || || | ||| Sbjct 49024 CCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATC-CAAAGTATGCCT 49082 Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 | || | || | |||| ||||| ||||||||||| || |||| || || || | Sbjct 49083 CGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATCAT 49142 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC--TGACTTTCAGCAA 117144 || | | ||||||||||| |||||||| || | ||||| || | || ||||| || Sbjct 49143 TCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCA--AA 49200 Query 117145 CGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 ||||||||| | || || || || ||||| |||||||| ||| || ||| Sbjct 49201 TGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTCTGATGT 49253 >seq546 Length=49788 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || ||||| || || ||||| || || | || || ||| | | Sbjct 29999 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 30058 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | |||| || || | |||||||| || || || | ||||| Sbjct 30059 AGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCA 30118 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | || || ||||| ||||| |||| ||||| || || ||||| Sbjct 30119 GCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAA 30178 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||| ||| | ||||| ||||| || Sbjct 30179 CATTCAGAAAGAGTCTACGCTTCATCTGGT 30208 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || ||||| || || |||||||| || | || ||||| | | Sbjct 29771 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATC 29830 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| || || | ||||| || || || || | || | Sbjct 29831 GGACACTATTGACAACG-TGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATC 29889 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| || |||| ||| || ||||| || || |||| || || || || |||| Sbjct 29890 AGCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACA 29949 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||| || | ||| |||| Sbjct 29950 ACATCCAGAAAGAATCAACGTTGCA 29974 >seq8657 Length=30266 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || ||||| || || ||||| || ||||| ||||| | || |||||| | Sbjct 26160 AAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATC 26101 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | | | |||| || |||| ||||| || || || || | || Sbjct 26100 ATCCGACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGA 26041 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || | || | ||| || ||||| |||| |||| || || ||| || || Sbjct 26040 CCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTA 25981 Query 40866 CAACATCCAGAA 40877 ||||||||| || Sbjct 25980 CAACATCCAAAA 25969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515147500808080