Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1548 120 5e-22 seq546 116 6e-21 seq3374 104 4e-17 seq8657 102 1e-16 >seq1548 Length=38083 Score = 120 bits (132), Expect = 5e-22 Identities = 272/406 (67%), Gaps = 5/406 (1%) Strand=Plus/Minus Query 205384 TGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTA 205443 ||||| | || ||||| |||| || || ||||| ||| || |||| | || | Sbjct 4698 TGATTCATGTAGATATGGGCATCTCCGATCACATGAACAAACTCGCCGGGTTGGAGATCA 4639 Query 205444 GTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCT 205503 || | ||||||||||| | ||||| | || ||||||| ||| ||||| || || Sbjct 4638 GTCACGTGTGCAATCATTTTTGTCAAAAGCGCGTAGCTAGCAATATTGAATGGAACGCCC 4579 Query 205504 AAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACA 205563 | ||| |||||||| |||| || |||||||| |||| | ||| ||| || Sbjct 4578 AGACCAATATCAGCGGATCGCTGGTACATTTGGCATGATA---ATTCCCCATTTGCAACG 4522 Query 205564 TGAAATT-GTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622 | ||||| | ||| | |||||| || |||| |||| | | | ||| | ||||| Sbjct 4521 TAAAATTGGCACATGA-GATGACAGGGAGGTAATGCCATTTCGGCTAAATCGGTTGGATT 4463 Query 205623 CCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATG 205682 ||| | | ||| || ||| || | | | | | | |||| | ||| | ||| | || Sbjct 4462 CCAACCGGATAAGATGATACGTCGACAATTTTGGTCAGTTTTGAGTTTGTGTATCACATC 4403 Query 205683 TGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACC 205742 | | ||||||||| || || | |||| | || |||||| | || | ||||| Sbjct 4402 GGCGAGTTGATCAAAGCCCTGGCCGCTGTAATCCGCATGCATATCTGTGTAACTTGCACC 4343 Query 205743 AAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCT 205788 ||||||||||||||||| || || | ||| |||||||| |||||| Sbjct 4342 GAAATGACGCCATTGAAAGCCGTAGATTGGTCCTAAATCGCCTTCT 4297 >seq546 Length=49788 Score = 116 bits (128), Expect = 6e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| |||||| | || | || || Sbjct 29771 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATC 29830 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||| || || || || ||||| || || |||||||| Sbjct 29831 GGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 29890 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || || |||||| |||| || | ||||| | | ||||| || Sbjct 29891 GCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 29950 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||||||||| ||||| ||||| ||||| | || ||||| || ||| || Sbjct 29951 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGAATGCAAATTT 30009 Score = 111 bits (122), Expect = 2e-19 Identities = 191/274 (70%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | || || || || || || || || ||| | || |||| | Sbjct 29313 ACCATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCT 29372 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || || |||| |||| || |||||||| |||||||| || || |||||| Sbjct 29373 TCAGACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGAT 29432 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | || || || || ||||||||| |||| || | ||||| | | ||||| Sbjct 29433 CAGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGAACGCTTGCGGATTAC 29492 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAA 124774 || ||||| ||||||||||| ||||| || || | || | || ||||| || | | | Sbjct 29493 AACATTCAGAAAGAATCAACGTTGCACTTAGTGCTTCGCCTCCGTGGTGGAATGCAGATA 29552 Query 124775 TTCATAAAAA--TTGATTGTAAATAAATATCACT 124806 || | |||| |||| || ||| || ||| ||| Sbjct 29553 TTTGTGAAAACCTTGACTGGAAA-AACTATAACT 29585 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || | || || |||||||||||| | || | || || Sbjct 29543 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATC 29602 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||| || || || || ||||| || || |||||||| Sbjct 29603 AGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 29662 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || ||||||||| |||| || | || || | | ||||| || Sbjct 29663 GCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAA 29722 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||||||||| ||||| || || ||||| | || ||||| || ||| || Sbjct 29723 CATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGTCTTCGTGGTGGAATGCAAATTT 29781 >seq3374 Length=57302 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| || || || ||||| | || |||||||| || |||||||| || ||| |||| Sbjct 26685 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 26744 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 |||||||| ||||| || || || |||||| || || ||| ||||| |||| ||||| Sbjct 26745 AACATTAGCGGATTACAACATCCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 26804 Query 124760 AGGTGGTATTAAAAA 124774 |||||| ||| || Sbjct 26805 TGGTGGTGGTAAGAA 26819 >seq8657 Length=30266 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||||| || || ||||| || ||| | ||| | ||| || Sbjct 26157 AATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATC 26098 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || ||| |||||||| || ||||| || || || || || Sbjct 26097 CGACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCA 26038 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| |||||||||||||| ||||| | ||||| | | ||||| || Sbjct 26037 ACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAA 25978 Query 124718 TATTCAAAAAG 124728 || ||||||| Sbjct 25977 CATCCAAAAAG 25967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755350868854400