Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq546 111 1e-19 seq8657 98.7 9e-16 >seq546 Length=49788 Score = 111 bits (122), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCC 118586 ||| ||||| | || || ||||| |||||||||||||| | || || | ||| || Sbjct 29525 CACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATC-CGCA-AGCGTTCGTCCGTCT 29468 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || |||||||||||| |||| ||||| |||||||| ||||| || || || |||||| Sbjct 29467 TCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCT 29408 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || || || | |||| ||||| | ||| || || | || | || Sbjct 29407 TGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTC 29348 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || || || ||||| |||||||||||||||| Sbjct 29347 TTTCCAGTAAGCGTTTTCACAAAAATCTGCATGG 29314 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCC 118586 ||||||||| | || || ||||| || ||||||||||| | || || | ||| || Sbjct 29981 CACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATC-CGCA-AGCGTTCGTCCGTCT 29924 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || ||||| || ||| |||| ||||| |||||||| ||||| || || |||||||| Sbjct 29923 TCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCC 29864 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || || || || | || | ||||||| |||||| || | || | ||| Sbjct 29863 TGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTT 29804 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || |||||||| ||||| Sbjct 29803 TTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 29772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| ||||| | || || ||||| || ||||||||||| | ||| || || || Sbjct 29753 CACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTC 29694 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || |||||||||||| |||| ||||| |||||||| ||||| || || |||||||| Sbjct 29693 TAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 29634 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||||| | ||| || || | || | ||||| Sbjct 29633 GATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCTACTTCCAAAGTTATAGTTTT 29574 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| ||||| |||||||| Sbjct 29573 TCCAGTCAAGGTTTTCACAAATATCTGCAT 29544 >seq8657 Length=30266 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| ||||||||||| | || || ||||| | |||||||| ||| | | Sbjct 25967 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 26026 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | |||||| || |||||||| || || ||||||||| ||| || || || | | Sbjct 26027 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 26086 Query 118669 CGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 ||| |||||| | || | |||||||| | || | ||||| ||||| || || || || Sbjct 26087 CGATGGTGTCGGATGAT-TCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACG 26145 Query 118728 AAAATCTGCAT 118738 ||||||||||| Sbjct 26146 AAAATCTGCAT 26156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433771536400036