Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq6453 266 3e-66 >seq6453 Length=80198 Score = 266 bits (294), Expect = 3e-66 Identities = 525/762 (69%), Gaps = 31/762 (4%) Strand=Plus/Minus Query 13918 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13977 |||||| | ||| | ||| ||||| ||||| ||||| |||| ||| || || | ||||| Sbjct 49531 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 49472 Query 13978 AAAATCAAATGGATTTGT----TGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 14033 | ||||| ||||| | ||| |||| ||| | || || ||| | || | Sbjct 49471 CCAGTCAAAGGGATTAGAAGCGTGATATAA---CTTGCTGACG-CCAAGTGCATGTAACA 49416 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093 ||| |||||| | ||||| || |||||| ||| ||| ||||||| || ||||| | Sbjct 49415 ATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCT 49356 Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 || |||| | || || |||||||| ||| || || || ||| ||| | Sbjct 49355 CGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGA---AATGA 49299 Query 14154 TCGTAATAATTT--CATTAGAAGGAGGATATTTTAGATGTTTAAAA---ATTAAACACGC 14208 | | | ||| | || ||| | | |||| |||| | || | ||| || Sbjct 49298 TTGCATGAATAGAGCCTTCT--GGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGC 49241 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268 ||| |||||||| || || ||||| | ||| || || || |||||||| | ||| || Sbjct 49240 AAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGG 49181 Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTC 14327 ||||||||||||||| || | ||||||||| | ||| |||||||||||| || || |||| Sbjct 49180 CATCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTC 49122 Query 14328 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT--TTTTGTTCGATAT 14385 | || || || ||||| |||| | || |||| ||||||| || | ||| | ||| Sbjct 49121 CTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCG--CA 49064 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 |||||| ||||||| | ||| || ||| | ||||||||||| || | Sbjct 49063 CCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAG 49004 Query 14446 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 |||||| | || || | | | | |||||||||||||| | ||| ||||| ||| Sbjct 49003 TAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTC 48944 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 |||||||| ||||| || || || || || |||||||| |||| |||||| | ||| Sbjct 48943 CGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTG 48884 Query 14566 TACCT--CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623 |||| ||| ||| || | ||| | |||||||||||| || |||||||| |||||| Sbjct 48883 AACCTCACTGCTGAAATTCAT--GGCGAGATTTTCATTAACAATCCCATCACTGGCTGCA 48826 Query 14624 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14665 || || ||||| | || ||| ||||||| | ||| |||||| Sbjct 48825 AAGAAGGCCAACACGTGTTTGATAAAGTGT--CTC-TCATTG 48787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482278475580440