Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq151 212 6e-50 seq6453 185 8e-42 seq546 118 9e-22 seq8657 93.3 4e-14 >seq151 Length=34927 Score = 212 bits (234), Expect = 6e-50 Identities = 1170/1853 (63%), Gaps = 45/1853 (2%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || ||||| ||||| || ||||| ||||| | ||||| ||||| ||||| ||||| Sbjct 29175 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 29234 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | ||| | | |||| | | |||| | ||| | || ||||||||| || Sbjct 29235 GTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAATG 29294 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCAT----CGACATTTCCCATAC 22320 |||||||||||||||| ||||| | | ||| ||| | | |||||||| || Sbjct 29295 TACGCTCCTCGATCGGCAGCCATGTCCA-AAAT---CGCCTTTTGCTTGATTTCCCAAAC 29350 Query 22321 GGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTT 22380 || |||||| || | | | | || || |||| | || ||||| ||| Sbjct 29351 TGTTTTGTACTTTTCTTTCACATGAGAAGGAATTTCAGCGATATTTTGTACGGAACCGCG 29410 Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGT-TCCACAAACCGATGGCGGTCAAATCTT 22439 || | | | ||| ||| || ||| | | |||||||| || | | | |||| Sbjct 29411 ATCGCGAAGGATTTGATTCCGAA-CGTCTGATGTCCACAAATTCATCTCAATAAGCTCTT 29469 Query 22440 TGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499 | |||| ||| || | | ||| || || | | |||||| || | | | |||| Sbjct 29470 CCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATGT 29529 Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559 |||| |||||||| |||| ||| || || || || || ||||| || || ||||| | Sbjct 29530 TGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTTG 29589 Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGC 22618 ||||||| || | ||| | ||||||| | ||||| | | | || ||| || | | Sbjct 29590 GCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTA-CTTGCTCTTTCAAC 29648 Query 22619 ATCGACCAGTCCCACAGATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAAC 22675 | ||| ||||| || |||| || | || | ||||||||| |||| || Sbjct 29649 TGCTTCCAATCCCATCGACCGGAATCGGGAATGAC---CTGCCACATATCAAATTGAAAG 29705 Query 22676 ACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCG-GCAAG 22734 | || ||||| | || || | || | |||||||| || | || || || | Sbjct 29706 ATACCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCC-GAGTTCCCGTGCCAA 29764 Query 22735 TTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC 22794 ||| | || |||| ||| || |||| || || || || |||| ||||| | || Sbjct 29765 TTCCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTC 29824 Query 22795 GGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854 | || || |||||| | || | || ||||| | |||| || || | ||| || Sbjct 29825 GCGAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTG 29884 Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATA 22914 |||||| || || |||||||| | | | |||| ||||| ||| || || | ||||| Sbjct 29885 AACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATA 29944 Query 22915 CCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNN 22974 |||| ||| || || |||| | ||| | || || ||||| || || Sbjct 29945 ATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAA 30004 Query 22975 NNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTGTTGAC--GGCGATCGAGGCA 23032 |||| | ||| | | ||| ||||| | ||||| ||||| || || Sbjct 30005 TTTTGCAAA--CTGAAATTCTTTCTGATAC-ACAAA--TTTTGACAATGCGATGGAAGCC 30059 Query 23033 AGATTGCATACGGCCACCTCGTCTTTGGA---CGTGTACTCTACAATTTCGGTACATAGA 23089 | ||||||||| |||| | |||||||| | |||||| | ||||| || ||| Sbjct 30060 AAATTGCATACTGCCA---CTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGA 30116 Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149 ||||| | || || || | ||| ||| ||| ||| ||||| || | || ||| Sbjct 30117 TTGCTTGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTG 30176 Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC 23209 || ||||| |||||||| || ||||| | ||| || | || || ||||| | Sbjct 30177 TAAAGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGGCAAACCACAATTGC 30236 Query 23210 TGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268 || || | ||| ||| || | || || ||||||||||| || ||||| || Sbjct 30237 TGGGCTTTGACA-GTCTTTCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATC 30295 Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328 ||||||| || | || || | || | | ||||||| | | |||||| Sbjct 30296 AAATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCA 30355 Query 23329 CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAG 23388 | || | ||| || ||| ||||||| ||||| || ||||| ||||| || || | Sbjct 30356 TTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAATAA 30415 Query 23389 TTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACAC 23448 || || || || || || || ||||| | |||| ||| || || | Sbjct 30416 ATCTCGTGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGAT 30475 Query 23449 GTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTG 23508 ||||||||||| ||||| || |||| ||||| | || | ||| || || || Sbjct 30476 ATCCGCATGCCAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCACCTTG 30535 Query 23509 ATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGC 23568 ||| ||||| || || |||| ||| |||| | ||||| || || | || || || Sbjct 30536 ATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACT 30595 Query 23569 GCCGCCTACG-CCCGCCACACTCGAACCTTTTGCT----CGAACGTTGTGAACGTGGAAA 23623 | | | || ||||| | | | || ||| | |||| ||| || || Sbjct 30596 TC--CATTCGTCCCGCGAATAT---AACTGTTGGTGGAGCGAATATTGGAAATACTGACG 30650 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || || | || || || ||| ||||||||||| |||||||| ||||| Sbjct 30651 CCAATACCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCG 30710 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 ||||| || |||| | | | | |||||||| || | ||| | | ||||| Sbjct 30711 TCGATAGAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTT 30770 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || ||| || ||||| | || ||||||||| | | ||||| | | ||| Sbjct 30771 CCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATAC 30830 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || || | ||||||| | | |||| |||||| |||| || || ||||| ||||| Sbjct 30831 GTTTCCAAAACGGCATCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATA 30890 Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 | ||| || | || | || || | |||||||| || | || ||| Sbjct 30891 TGTTGTGGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTT 30950 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 ||||| ||||||||||| || | |||||| | ||| | ||||| ||||| Sbjct 30951 TTAAAGCCAAAATAGTCGTAATCAAAGTCTCTATCACCGATAATGGCGGAATT 31003 >seq6453 Length=80198 Score = 185 bits (204), Expect = 8e-42 Identities = 593/896 (66%), Gaps = 52/896 (6%) Strand=Plus/Plus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 |||||| | |||||||| || | | || |||||| ||||||| || || ||||| ||| Sbjct 48662 TTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCA 48721 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT--TCCC 57657 |||||||||| |||||| | || || | || ||| || ||| | | Sbjct 48722 AGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATA 48781 Query 57658 TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATG 57717 || | ||| |||||| | ||||| |||||||||||||| || || || || |||| Sbjct 48782 TCGGACAAT--GAGAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATG 48839 Query 57718 GTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA-CA-AGAAGTGCAAGTGACGGAGGC 57775 | |||||||| || ||| | | | | || ||||| || || || ||| | |||| || Sbjct 48840 GGATTGTTAATGAAAATCTCGCC--ATGAATTTCAGCAGTGAGGTTCAAATCCCGGAAGC 48897 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCT 57835 |||||||||| ||||| ||| | || || ||||| | || || ||| |||||||| | Sbjct 48898 TCGATGCTTTTATGGATTCCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTT 48957 Query 57836 ACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTGTTCAA--CGCGA 57891 | | || ||||| ||| | || || |||| ||| |||| || | | | | ||||| Sbjct 48958 ATTGATTGATACATACATCAAAGATCCAAC--CGAAAAAC--AGCATTTACTATGCGCGA 49013 Query 57892 TCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATG----GATAAA 57946 | |||||||| |||| | | |||| || ||| | ||| | | ||||| ||| | Sbjct 49014 TTGAAACAAT-CCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCA 49072 Query 57947 AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006 ||| ||| |||| || || || | | || || || ||||||||||| || || Sbjct 49073 AAG----TATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTT 49128 Query 58007 CTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCC 58065 || || || || ||| | ||||||||| |||||||||| || ||||||| || | Sbjct 49129 TTTCTCCGGATCATTCTGC-TCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGAC 49187 Query 58066 TGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCC 58125 | ||| || ||| | || || || || || || ||| ||| ||||| || | Sbjct 49188 TTTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTC 49247 Query 58126 TAATGTACTCTCACATTGTCAATAAACCGAC-GCGGGATCGCATCTTGGACATTATCACC 58184 | |||||||| | | || ||||| | | | || || || || | || || || Sbjct 49248 TGATGTACTCGAAACTGGTAAATAAGCTTCCAGAAGGCTCTATTCATGCA-ATCATTTCC 49306 Query 58185 GAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244 || || || |||||| | || ||||| || | || || || | | | || Sbjct 49307 GACGCCGTTATCATCGAACAAGAATTTGTACGAGATTCACTTCCAGTCGAGCTAATTGGA 49366 Query 58245 ATGAA--CAATGATTTGAT--GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 ||||| ||| |||||| ||||| ||||| |||||||| || || || | || | Sbjct 49367 ATGAATTCAA--GTTTGATGGGTCAA--TACATCGAGTTTGTGGCGGATCGATTGTTACA 49422 Query 58301 CGAACTGATTGGAGAGCGTCA-----TTACAACACG--AAAAATCCGTTTGATTTTATGA 58353 | || ||| |||||| ||| | |||| ||||| ||||| | ||| Sbjct 49423 TGCAC---TTG----GCGTCAGCAAGTTATATCACGCTTCTAATCCCTTTGACTGGATGG 49475 Query 58354 ATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATAT 58409 || |||| || || | || || ||||||||||| || ||| ||| | |||||| Sbjct 49476 ATATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGCGTTGGAGAATAT 49531 >seq546 Length=49788 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || ||||| || || | || || ||| | || Sbjct 30000 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 30059 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || || || |||||| ||||| | || || |||||| Sbjct 30060 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 30119 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || |||||||| || || || ||||| |||||||| || | ||||| ||| Sbjct 30120 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAAC 30179 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAG 31422 ||||| ||||| || || ||||||||||||||| | || | || ||||| Sbjct 30180 ATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGGTAG 30229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || ||||| || || | || || || | || Sbjct 29772 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATCG 29831 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || || || |||||||||||| | || || || ||| Sbjct 29832 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 29891 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || ||||| || ||||| || ||||| | |||||| | | || || | ||||| | Sbjct 29892 CAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCT-TGCG-GATTACA 29949 Query 31371 ACATTCAAAAAGAATCGAC 31389 |||| || |||||||| || Sbjct 29950 ACATCCAGAAAGAATCAAC 29968 >seq8657 Length=30266 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||| ||||| | || || ||| | ||| Sbjct 26156 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 26097 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||||| | || |||||||| Sbjct 26096 GACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 26037 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| | || ||||| || ||||| ||||| ||| Sbjct 26036 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGAC 26001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445704366033360