Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq6453 257 2e-63 >seq6453 Length=80198 Score = 257 bits (284), Expect = 2e-63 Identities = 523/760 (69%), Gaps = 25/760 (3%) Strand=Plus/Minus Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 |||||| | ||| | ||| ||||| ||||| ||||| |||| ||| || || | ||||| Sbjct 49531 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 49472 Query 13646 AAAATCAAATGGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 | ||||| ||||| | | ||| | |||| | || || ||| | || ||| Sbjct 49471 CCAGTCAAAGGGATTAGAAGCGTGATATA-ACTTGCTGACG-CCAAGTGCATGTAACAAT 49414 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | ||| || | |||||| || |||||| ||| ||| ||||||| || ||||| | Sbjct 49413 CGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCG 49354 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 || |||| | || || |||||||| ||| || || || || ||| ||| Sbjct 49353 ACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGA---AATGATT 49297 Query 13824 GTAATAATCT--CATTAGAAGGAGGATATTTTAGATGTTTAAAA---ATTAAACACGCAA 13878 | | ||| | || ||| | | |||| |||| | || | ||| |||| Sbjct 49296 GCATGAATAGAGCCTTCT--GGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAA 49239 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | |||||||| || || ||||| | ||| || || || |||||||| | ||| |||| Sbjct 49238 AGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCA 49179 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATATTCCC 13997 ||||||||||||| || | ||||||||| | |||| ||||| ||||| || || ||||| Sbjct 49178 TCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCT 49120 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT--TTTTGTTCGATATCC 14055 || || || ||||| |||| | || |||| ||||||| || | ||| | ||| || Sbjct 49119 TCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCG--CACC 49062 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 |||| ||||||| | ||| || ||| | ||||||||||| || | || Sbjct 49061 ATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAGTA 49002 Query 14116 AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 ||| | || || | | | | |||||||||||||| | ||| ||||| ||| | Sbjct 49001 AATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCG 48942 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 ||||||| ||||| || || || || || ||||||||||||| |||||||| ||| | Sbjct 48941 AGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGAA 48882 Query 14236 CTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 | || | | |||| | ||| | |||||||||||| || |||||||| |||||||| Sbjct 48881 CCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAAG 48823 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14334 || ||||| | || ||| ||||||| | ||| ||||||| Sbjct 48822 AAGGCCAACACGTGTTTGATAAAGTGT--CTC-TCATTGT 48786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479661239852200