Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq6453 271 7e-68 >seq6453 Length=80198 Score = 271 bits (300), Expect = 7e-68 Identities = 525/759 (69%), Gaps = 23/759 (3%) Strand=Plus/Minus Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433 |||||| | ||| | ||| ||||||||||| ||||| |||| ||| || || | ||||| Sbjct 49531 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 49472 Query 13434 AAAATCGAATGGATTTGT----TGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 | || || ||||| | ||| |||| ||| | || || ||| | ||| | Sbjct 49471 CCAGTCAAAGGGATTAGAAGCGTGATATAA---CTTGCTGACG-CCAAGTGCATGTAACA 49416 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 ||| ||| || | |||||| || |||||| ||| ||| ||||||| || ||||| | Sbjct 49415 ATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCT 49356 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 || |||| | || || |||||||| ||| || || || ||| || || Sbjct 49355 CGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTG 49296 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAA--AAATTAAACACGCAAA 13667 | |||| | | | | | || ||||| | || | | || | ||| ||||| Sbjct 49295 CATGAATAGAGCCTTCTGGA--AGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAA 49238 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 |||||||| || || ||||| | ||| || || || |||||||| | ||| ||||| Sbjct 49237 GTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCAT 49178 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTCCCT 13786 |||||||||||| || | ||||||||| | ||| |||||||||||| || || ||||| | Sbjct 49177 CAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTT 49119 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC-TTTTTTGTTTGATATCCAT 13845 | || || ||||| |||| | || |||| ||||||| || | |||| | | |||| Sbjct 49118 CGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA-CCAT 49060 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || ||||||| | ||| || ||| | |||||||| || || | |||| Sbjct 49059 TTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAGTAAA 49000 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 || | || || | | | | |||||||||||||| | ||| ||||| ||| ||| Sbjct 48999 TGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAG 48940 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025 ||||| |||||||| || || || || |||||||| |||| |||||| | ||| ||| Sbjct 48939 TGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGAACC 48880 Query 14026 TC-CGAGTAAAATCTTTCTGCCAAG-TTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 || | | ||| || || | || |||||||||||||| |||||||| |||||||| | Sbjct 48879 TCACTGCTGAAA--TTCATGGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAAGA 48822 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14122 | ||||| | || ||| ||||||| | ||| ||||||| Sbjct 48821 AGGCCAACACGTGTTTGATAAAGTGT--CTC-TCATTGT 48786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478522198386120