Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq546 87.8 1e-12 >seq546 Length=49788 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||| || | || || || || | |||||||| | Sbjct 29998 CCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 29939 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| || | |||||| ||||| || |||| || || ||||| | || Sbjct 29938 AGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGA 29879 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | | || || || ||| ||||| | |||||| Sbjct 29878 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACT 29819 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| ||||| || || || || || ||||||||||||||| Sbjct 29818 TCCAAAGTTATGGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 29771 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||| || || | || || || || | |||||||| | Sbjct 29770 CCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 29711 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| || | |||||| || || || |||| || || ||||| | || Sbjct 29710 AGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 29651 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | | || || || ||| ||||| | ||| || Sbjct 29650 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCTACT 29591 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | |||||||||||||| || | ||||||||||| || |||||| Sbjct 29590 TCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 29543 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | |||||||| | | || ||| |||| |||| |||||| |||||||| Sbjct 30191 CTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAA 30132 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||| | || || || || | || | |||||||| || |||| | | || || | Sbjct 30131 AATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATT 30072 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | || || || || || || | ||| |||||||| || || || || || || Sbjct 30071 GTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAAC 30012 Query 43098 AAAAATTTGCATT 43110 ||||||||||||| Sbjct 30011 AAAAATTTGCATT 29999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381317854461714