Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq151 266 4e-66 seq6453 205 1e-47 >seq151 Length=34927 Score = 266 bits (294), Expect = 4e-66 Identities = 1040/1623 (64%), Gaps = 28/1623 (2%) Strand=Plus/Plus Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 |||| || ||||| ||||| | || ||||| || | || | ||| ||||||||| Sbjct 29791 AATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATGGAA 29850 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || | ||||| || || | ||||||||||| || || || |||| |||| Sbjct 29851 GACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTC 29910 Query 71561 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| |||| Sbjct 29911 GCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGTTGA 29970 Query 71621 GATTTCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCAT 71677 ||||| | || ||| | ||| || | || ||| ||| | |||| | | Sbjct 29971 GATTTTTCGTAACGATTTTTGTGATT---TCGTATAATTTTGCAAACTGAAATT--CTTT 30025 Query 71678 CTATTACAAACACGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 || |||| | | || ||| || | || |||| ||| || || || || || || | Sbjct 30026 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 30085 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 || | || | || |||||| ||| ||||| || | |||||||| | ||| || Sbjct 30086 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 30145 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 ||||| || ||||| || || || ||||| ||| |||| || || || ||||| Sbjct 30146 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 30205 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATATTCTT---GTATC 71911 |||| || | ||| || ||| | | | | | |||| | | |||| | Sbjct 30206 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTG--ACAGTCTTTCGGGCAA 30261 Query 71912 TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTA 71971 | |||| ||||| | | |||||| || || ||| |||||| | | | | Sbjct 30262 TGTTTTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 30321 Query 71972 ATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCA 72031 || ||| || |||||||| | || ||| ||| | || | || ||||||| Sbjct 30322 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 30381 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 |||| ||||| || ||||||||||| ||||| ||||| | || ||| || |||| Sbjct 30382 TAAACAGATCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGTTCATTTC 30441 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | |||||| || || || ||| | | ||||| | |||||| || || | || | Sbjct 30442 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAA 30501 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 30502 TTGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGA 30561 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | || | | |||||||| ||| ||||| || ||||| |||||| ||||| || Sbjct 30562 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 30621 Query 72272 CACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||| ||||||||| ||| | || || || || ||| || || || | | Sbjct 30622 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 30681 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | ||| |||| | ||| || || ||||| || ||| |||||| |||| | ||||| Sbjct 30682 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 30741 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 |||| || | |||| | ||| ||||||||||| || | || |||| || |||| Sbjct 30742 AACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 30801 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 72511 |||| | |||| |||| | | ||||| || | | | | || | || | || | Sbjct 30802 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTTTGT 30861 Query 72512 GTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTA 72571 |||| || || || || ||||||| |||||| || || | |||| | || ||| | Sbjct 30862 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCA 30921 Query 72572 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 72631 ||||| || ||||| |||| ||||||||| |||||||||| ||| |||||||| Sbjct 30922 CACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTC 30981 Query 72632 GTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGA 72691 || ||||| | |||||||| || || | | |||| || || ||| | Sbjct 30982 TATCACCGATAATGGCGGAATTGAGAGCTTCTTTGTTCTCCATAACAAT-TCGATGCACA 31040 Query 72692 TACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATAA 72746 | ||| | |||| |||| | ||| ||| | ||| | || ||||| Sbjct 31041 TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA 31099 Query 72747 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 72806 | || |||||| || | ||| ||||| | || |||| ||| || | || || Sbjct 31100 ---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAAT 31156 Query 72807 TCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGC 72866 || || || | ||| |||| ||||||||||| | || ||||| ||||||| Sbjct 31157 TCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGC 31216 Query 72867 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||||| ||||||||| || || || || ||| | || || || ||| Sbjct 31217 TGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTG 31276 Query 72927 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 72986 || ||||| | ||||| | | || ||||||||| || || | |||| | || || Sbjct 31277 AGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCG 31336 Query 72987 AGACGTGATTTTATCAAACATAACATTTTCCCGGCATCCATTTCGTTTAACGACAAACAT 73046 | |||||||| || || | || ||| | ||| | ||||| | |||| |||| Sbjct 31337 CGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACAT 31396 Query 73047 TTT 73049 ||| Sbjct 31397 TTT 31399 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 || || ||||||||||| ||||| || ||||| ||||| |||| |||||||| Sbjct 29175 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 29234 Query 70891 GTTAGTTTGGA-ATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGAT 70949 || ||||| | || | || ||||| ||||||||||| | || ||||| ||| || Sbjct 29235 GTGAGTTTACTGACAG-TCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAAT 29293 Query 70950 GAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGT 71009 | | ||||| | || |||||||| | | |||| |||||| |||||||||| || Sbjct 29294 GTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTGT 29353 Query 71010 TTTATA 71015 ||| || Sbjct 29354 TTTGTA 29359 >seq6453 Length=80198 Score = 205 bits (226), Expect = 1e-47 Identities = 419/612 (68%), Gaps = 17/612 (3%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||||| |||||| || || || || || || ||||| | ||| || | || || |||| Sbjct 49253 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 49194 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | ||||| ||||| | || || || || |||||||||||||| ||| |||||||| Sbjct 49193 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 49135 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || || ||||||||||| || ||||||||||| | | ||| ||| || | |||| | Sbjct 49134 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCA-TA 49076 Query 42236 TCATGTATC-CA-CTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 || ||| || | ||| | ||||| | || || || | || || || || ||||| Sbjct 49075 CTTTGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 49016 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || || | | || | |||||| | |||||| | |||||||| ||||| | Sbjct 49015 AATCGCGCATAGTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAA 48956 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 ||||| ||| || || || ||||| || || || || ||||| || || |||| || Sbjct 48955 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGC 48896 Query 42412 CTCGGTAACCTGTACTT--CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 || | | || || | ||| ||| || | || | |||||| || || || || Sbjct 48895 TTCCGGGATTTGAACCTCACTGCTGAAATTCAT--GGCGAGATTTTCATTAACAATCCCA 48838 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC---GTCCGGTGTT 42526 |||||||||||||| || ||||| || ||||| ||||| | | | || |||| | | Sbjct 48837 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCC---GAT 48781 Query 42527 AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 | ||| ||| ||||| || || | | ||| | ||||||| | |||||||| | Sbjct 48780 ATATTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTT 48721 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAAT 42646 || ||||| || |||||||| | ||| || ||| | ||| || || || | ||||| Sbjct 48720 GCCTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAG 48661 Query 42647 CTATTTGGATTT 42658 | || |||||| Sbjct 48660 CGGTTCGGATTT 48649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671045802591080