Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq546 114 1e-20 >seq546 Length=49788 Score = 114 bits (126), Expect = 1e-20 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTT 143033 ||||| || | || |||||||| || ||||||||||| | || | | ||| ||||| Sbjct 29524 ACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATC-CGCAA-GCGTTCGTCCGTCTT 29467 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093 | |||||||| ||||| ||||||||||||||||||| ||||| || ||||||||||| Sbjct 29466 CTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTT 29407 Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 ||| || |||| | || | |||||| | | || ||||| | ||| | |||| Sbjct 29406 GAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCT 29347 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || | ||||| || || || ||||| Sbjct 29346 TTCCAGTAAGCGTTTTCACAAAAATCTGCAT 29316 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||| || | || |||||||| || ||||||||||| Sbjct 29770 CCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 29711 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| |||||||| ||||| ||||||||||||||||||| ||||| Sbjct 29710 AGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 29651 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | | |||||| Sbjct 29650 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCTACT 29591 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || ||||| ||||| || ||||| ||||| Sbjct 29590 TCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCAT 29544 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTTCGAGTTGTTTAC 143045 || |||||||| || ||||||||||| | || | | ||| |||||| |||||||||| Sbjct 29968 GTTGATTCTTTCTGGATGTTGTAATC-CGCAA-GCGTTCGTCCGTCTTCTAGTTGTTTAC 29911 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | || ||||||||||||||||||| ||||| || ||||| ||||| || || | Sbjct 29910 CGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCT 29851 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | | || | ||||||| | || ||||| | ||| | || || || |||| | Sbjct 29850 TCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTCCCAGTCAGCG 29791 Query 143166 TTTTTACGAATATTTGCAT 143184 | || || || |||||||| Sbjct 29790 TCTTAACAAAAATTTGCAT 29772 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| ||||| ||||| || ||||||||||| Sbjct 30226 CCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCA 30167 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||||||||| ||| | || ||||||||||| || ||||| Sbjct 30166 AGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGA 30107 Query 143078 ATGCCTTCTTTGTC 143091 || ||||||||||| Sbjct 30106 ATTCCTTCTTTGTC 30093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506943842608560