Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6453 217 1e-51 >seq6453 Length=80198 Score = 217 bits (240), Expect = 1e-51 Identities = 564/843 (67%), Gaps = 24/843 (3%) Strand=Plus/Minus Query 12865 ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCAT 12924 |||||| | ||| | ||| |||||||||||||||||||||| | ||||| | ||||| Sbjct 49531 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 49472 Query 12925 AAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC--ACCCTAATTCTA-GTAACAA 12981 | || || ||||| ||| | ||| || | || | || | | ||||||| Sbjct 49471 CCAGTCAAAGGGATTA---GAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAA 49415 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 || || || |||||||| ||||| || ||| ||| | |||||||| |||| | Sbjct 49414 TCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTC 49355 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 || || | | ||| || ||| | || ||| || ||| || ||| || || | Sbjct 49354 GACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGC 49295 Query 13102 TCTTATTACGTTCTCTAATGGAGG---ATTTGATAGATGCTTAAACATCATACATGCAAA 13158 | | || | | || |||| | |||| || | | |||||| ||||||||| Sbjct 49294 A-TGAATA-GAGC-CTTCTGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAA 49238 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||| || | ||||||||| | ||| || ||||| |||||||| || || ||||| Sbjct 49237 GTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCAT 49178 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaaTATTCCTT 13277 | |||||||| || | ||||||||||| |||| || || || || ||||| ||||||| Sbjct 49177 CAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTT 49119 Query 13278 CAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC-CAC 13336 | || || ||||| |||| || ||||| || ||| | |||| | ||| ||| Sbjct 49118 CGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACG----AGGCATACTTTGGATCGCAC 49063 Query 13337 --TTTC-TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 |||| ||||| | |||||| | ||||||| || |||| || ||| | | Sbjct 49062 CATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAGT 49003 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 |||| | |||||| | ||| || || ||||| |||||||| ||||| ||| Sbjct 49002 AAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCC 48943 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 || || |||||||| || || |||||||| |||||||| |||| ||| || | | ||| Sbjct 48942 GAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGA 48883 Query 13514 ACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 || || | | |||| | || | ||||| ||||| ||||| ||||| || ||||| Sbjct 48882 ACCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAA 48824 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGG 13632 || || | | ||| || ||||| | | | || || || || | || | ||| || Sbjct 48823 GAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATATTAAGCCAGTCATT 48764 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 | || | ||||| | || || |||||||||| || | || |||||||| Sbjct 48763 CATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATA 48704 Query 13693 CAT 13695 ||| Sbjct 48703 CAT 48701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430923922826466