Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq546 172 1e-37 seq6453 123 6e-23 seq3466 118 2e-21 seq464 89.7 1e-12 >seq546 Length=49788 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| |||| || || || |||||||||||||| || || || Sbjct 29545 ATTCCACCACGGAGGCGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCC 29486 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || |||| ||||||||||||||||||||||| || || || | || ||||||||| Sbjct 29485 GCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGA 29426 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || |||||||| || |||||||| || | || || || || Sbjct 29425 GGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCA 29366 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| |||||||| ||||| ||||| |||||||| Sbjct 29365 ACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 29316 Score = 156 bits (172), Expect = 1e-32 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| ||||| | ||||| ||||||||||| || || || | || || | ||||| Sbjct 30212 AAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGTCCGTC 30153 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || ||||||||||| | || || || ||||| ||||||||||| || Sbjct 30152 TTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTC 30093 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | ||||| || ||| || || | |||||||| Sbjct 30092 CTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGT 30033 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || ||||| || |||||| Sbjct 30032 TTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 29999 Score = 147 bits (162), Expect = 5e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || |||| || || || ||||||||||| || || || || Sbjct 29773 ATTCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCC 29714 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | ||||||||||||||||||||||| || || || | || ||||||||| Sbjct 29713 GCAAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGA 29654 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| ||||| || || || || || | || || | ||| Sbjct 29653 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCT 29594 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || ||||| || ||||| | ||||| ||||||||||||||| Sbjct 29593 ACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 29543 Score = 116 bits (128), Expect = 9e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||||||||| || || || || | || |||| ||||||||||||||| Sbjct 29974 TGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGT 29915 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || || || | || ||||||||||| |||||||| || ||||| ||||| Sbjct 29914 TTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTC 29855 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | || || | || || || | || || || || ||||| Sbjct 29854 GCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTCCCAGTC 29795 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| || |||||| Sbjct 29794 AGCGTCTTAACAAAAATTTGCATT 29771 >seq6453 Length=80198 Score = 123 bits (136), Expect = 6e-23 Identities = 291/434 (67%), Gaps = 13/434 (3%) Strand=Plus/Plus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || || ||||||| |||||||| || ||||| |||||||| | ||| ||| | Sbjct 48818 GCCTTCTTTGCAGCCAGTGATGGGATTGTTAATGAAAATCTCGCCATGAATTTCAGCAGT 48877 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 ||||| || || || ||||| |||| ||||| |||||||| || || ||||||||||| Sbjct 48878 GAGGTTCAAATCCCGGAAGCTCGATGCTTTTATGGATTCCAAATTGCAATAGAAAATATA 48937 Query 268979 CATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAA 269038 || || || |||| |||| || ||||| || || | ||| | ||| ||| Sbjct 48938 CACTCGGAAGTGTATTCGTTATTGATTGATACATACATCAAAGATCCAACCGA----AAA 48993 Query 269039 AGACTATTTTCT----TCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGC 269094 | | |||| || | || ||| || || || | || ||| | ||||||| Sbjct 48994 ACAGCATTTACTATGCGCGATTGAAACAATCCCGTGCGTTACCAATAAAGCACAATGGGC 49053 Query 269095 TCTGAAATGG-ATAAACGATAGCGCGCCT--TACGGAGAAAGGTTAGTTGCTTTTGCCGC 269151 |||||||| | | | || |||| | | |||||| | || || ||||| || Sbjct 49054 GTTGAAATGGTGCGATCCAAAGTATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGC 49113 Query 269152 TGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGG 269211 || ||||| || || || || || || || | |||| |||||| |||||||| |||| Sbjct 49114 CGTCGAAGGAATCTTTTTCTCCGGATCATTCTGCTCTATATTTTGGCTGAAGAAACGAGG 49173 Query 269212 CCTTATGCCAGGA-TTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACT 269270 | ||||| ||| || |||| || || || | || || | || ||||| |||| | Sbjct 49174 ATTGATGCCTGGACTTTGCTTT-TCAAATGAGCTCATCAGTCGTGATGAAGGACTACATT 49232 Query 269271 GCGACTTCGCTTGT 269284 | ||||| || ||| Sbjct 49233 GTGACTTTGCATGT 49246 >seq3466 Length=44099 Score = 118 bits (130), Expect = 2e-21 Identities = 115/143 (80%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 |||||| | ||||||||| ||||||||||| ||||||||||| | ||||| |||||||| Sbjct 36131 TAGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGG 36072 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTAT-CGCTAGGTTCT 104509 |||||||| || || |||||| ||||| || ||||| || | || | |||| | |||| Sbjct 36071 AATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCT-GATTCT 36014 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || |||||||| || || || Sbjct 36013 ACTTCGAGTGTAATTGTTTTTCC 35991 >seq464 Length=101 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||||||||||||||||||||| || || || | || ||||||||||| |||||||| Sbjct 4 CCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCC 63 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTC 104490 || ||||| ||||| || || || || || Sbjct 64 TTGTCCTGGATCTTCGCCTTCACGTTGTC 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151234162733164