Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq546 127 2e-24 >seq546 Length=49788 Score = 127 bits (140), Expect = 2e-24 Identities = 158/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||| |||||||| || ||||| || || | ||| ||||| | || || ||| | || Sbjct 29525 CACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATC-CGCA-AGCGTTCGTCCGTCT 29468 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || |||||||| | ||||| | | ||||||||| |||||||| ||||||||||| Sbjct 29467 TCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCT 29408 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || ||||| || ||| ||||| | || || || | |||||||| Sbjct 29407 TGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTC 29348 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||||||||| ||||||||||| ||||||||| Sbjct 29347 TTTCCAGTAAGCGTTTTCACAAAAATCTGCATG 29315 Score = 116 bits (128), Expect = 3e-21 Identities = 173/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | | || | |||||||||||| || ||||| || || | Sbjct 30011 AAAAATTTGCATTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGAT 29952 Query 94828 GTTATAATCGCTCATAGTGTTGG--AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | || || ||| | || || || ||||| ||| | ||||| | | | Sbjct 29951 GTTGTAATC-CGCA-AGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGT 29894 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| |||||||| ||||| ||||| | || || ||||| ||| | | | |||| Sbjct 29893 TGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTG 29834 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | ||||| || | || |||||||| ||||| || || || ||||| || ||| Sbjct 29833 TCCGATGACTCGACTTCCAAAGTTATGGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGC 29774 Query 95006 AT 95007 || Sbjct 29773 AT 29772 Score = 111 bits (122), Expect = 1e-19 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | | || | ||| |||||||| || ||||| || || | Sbjct 29783 AAAAATTTGCATTCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGAT 29724 Query 94828 GTTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | ||| || | || || || |||||||| | ||||| | | | Sbjct 29723 GTTGTAATCCGCAAGAGTACGTCCG--TCTTCTAGTTGTTTTCCAGCGAAGATCAGACGT 29666 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| |||||||| ||||| ||||| | || || ||||| ||| | | | |||| Sbjct 29665 TGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTG 29606 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | || || ||||||||||| | ||||||||||| |||||| Sbjct 29605 TCTGATGACTCTACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGC 29546 Query 95006 AT 95007 || Sbjct 29545 AT 29544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||| ||||| ||| |||| |||| | |||||| ||||||||||| ||||||||| Sbjct 30154 TCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTG 30095 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | ||| ||| || | || || || | ||| || Sbjct 30094 TCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATA 30035 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || || || ||||| || ||||| Sbjct 30034 GTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 30000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448228814675880