Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq6453 150 2e-31 >seq6453 Length=80198 Score = 150 bits (166), Expect = 2e-31 Identities = 399/605 (66%), Gaps = 14/605 (2%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 |||||| ||||||||| |||||||| | |||||||| | ||| || | ||||| |||| Sbjct 49253 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 49194 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | | || ||||| ||||||| || || | ||||||||| || ||| |||| ||| Sbjct 49193 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 49135 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTC 21645 || || || || || || ||||| ||||| || || | || ||| | | | | || | Sbjct 49134 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 49075 Query 21646 TTT--ATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTA 21703 ||| ||| | |||||| ||||||| ||| || | ||| || ||||| Sbjct 49074 TTTGGATCGCA---CCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTT 49018 Query 21704 TCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNN 21763 ||||| || || | ||| | |||||| | ||| | ||| Sbjct 49017 TCAATCGCGCATAGTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAAT 48958 Query 21764 NNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTT 21823 ||||| ||| || |||||||||||||| || || || ||||| ||||| |||| Sbjct 48957 AACGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGA 48898 Query 21824 GCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882 || || | ||||||||| | |||| || || | |||||||| || || || Sbjct 48897 GCTTCCGGGATTTGAACCTCACTGCTGAAATTCATG-GCGAGATTTTCATTAACAATCCC 48839 Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942 ||||||||| ||||| || ||||| | | ||| ||||| | || || || || | || Sbjct 48838 ATCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATAT 48779 Query 21943 TTTTTTCCAATCTAATAAATCTTTTG--ATAAATCTACTTCTTCAGTTGTCCAAAAGCTA 22000 || ||| || || || | || ||||| | |||||| | ||||||||||| Sbjct 48778 ATTAAGCCAGTC--ATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTT 48721 Query 22001 GCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAAC 22060 || || || |||||||| ||| || ||| | | ||| ||||||| ||||| Sbjct 48720 GCCTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAG 48661 Query 22061 CTGTT 22065 | ||| Sbjct 48660 CGGTT 48656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531826779354920