Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq546 125 5e-24 seq143 113 3e-20 seq110 109 4e-19 seq207 105 4e-18 seq2412 100 2e-16 seq1750 96.9 2e-15 >seq546 Length=49788 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||| |||||| || ||| || ||||| |||||||| | Sbjct 30228 TACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCG 30169 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| |||| || | |||||| |||||||| ||||| ||||| || || | | Sbjct 30168 CAAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAG 30109 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || || ||||||||| | || ||||||| | ||| | Sbjct 30108 GAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCA 30049 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||||||||| || |||| || || || || || ||||| Sbjct 30048 CTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 30000 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || || || || |||||||| | | | |||| |||| |||| ||||||||| || || Sbjct 29734 TCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAG 29675 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || ||||| ||||| | || | ||||| |||||| || || |||||| || Sbjct 29674 ATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTG 29615 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||| ||| || ||||| || || |||||||| || |||||||||||||| Sbjct 29614 TCAATAGTGTCTGATGACTCTACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACA 29555 Query 38307 AATATCTGCAT 38317 ||||||||||| Sbjct 29554 AATATCTGCAT 29544 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || || ||||| |||||||| | | ||| |||| |||| ||||||||| || || Sbjct 29506 TCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAG 29447 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || ||||| ||||| | || | ||||||||||| ||| || ||| ||||| Sbjct 29446 ATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTA 29387 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || ||| | |||||||| || || || || || || || | |||||||| Sbjct 29386 TCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACA 29327 Query 38307 AATATCTGCATG 38318 || ||||||||| Sbjct 29326 AAAATCTGCATG 29315 >seq143 Length=1183 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 429 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 370 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| ||| Sbjct 369 ACTTATATTTAGCTTTA 353 >seq110 Length=492 Score = 109 bits (120), Expect = 4e-19 Identities = 74/83 (89%), Gaps = 5/83 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 410 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 469 Query 25957 TAATCCTTTCATGCGCGTCACTA 25979 |||||| |||||||||||||||| Sbjct 470 TAATCCATTCATGCGCGTCACTA 492 >seq207 Length=101 Score = 105 bits (116), Expect = 4e-18 Identities = 73/83 (88%), Gaps = 5/83 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 83 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 24 Query 25957 TAATCCTTTCATGCGCGTCACTA 25979 |||||| |||||||||||||||| Sbjct 23 TAATCCATTCATGCGCGTCACTA 1 >seq2412 Length=40916 Score = 100 bits (110), Expect = 2e-16 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| Sbjct 38196 CAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCACTTATATT 38137 Query 20016 TAGCCTTA 20023 |||| ||| Sbjct 38136 TAGCTTTA 38129 >seq1750 Length=1431 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 867 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 808 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 807 GCCCATATTTAGCCTT 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334901753212523