Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq8657 122 7e-23 seq546 107 2e-18 seq151 84.2 2e-11 >seq8657 Length=30266 Score = 122 bits (134), Expect = 7e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| ||||| |||||||||| || ||| | || Sbjct 26156 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 26097 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || |||||||||||||| || ||||| ||||| ||| Sbjct 26096 GACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 26037 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| || ||||| ||| || || | ||||||||| Sbjct 26036 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAAC 25977 Query 22399 ATTCAAAAAG 22408 || ||||||| Sbjct 25976 ATCCAAAAAG 25967 >seq546 Length=49788 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | || | ||||||||| | | Sbjct 30000 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 30059 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || || || ||||| || || ||||| || || || Sbjct 30060 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 30119 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| ||||| | || || ||||| | | ||||||||| Sbjct 30120 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAAC 30179 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| || || Sbjct 30180 ATTCAGAAAGAGTCTAC 30196 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | || || || || ||||| | ||||| || | | Sbjct 29316 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 29375 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||||||||| || || ||||| || ||||| Sbjct 29376 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 29435 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| |||| || || || | | ||||||||| Sbjct 29436 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAAC 29495 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| |||||||| || | || ||||| Sbjct 29496 ATTCAGAAAGAATCAACGTTGCACTTAGT 29524 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | ||| | ||||| || | | Sbjct 29772 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATCG 29831 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||| || ||||| || ||||| Sbjct 29832 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 29891 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| ||||| |||| || || || | | ||||||||| Sbjct 29892 CAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAAC 29951 Query 22399 ATTCAAAAAGAATCCAC 22415 || || |||||||| || Sbjct 29952 ATCCAGAAAGAATCAAC 29968 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| | ||| | ||||| || | | Sbjct 29544 ATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATCA 29603 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||| || ||||| || ||||| Sbjct 29604 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 29663 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| |||| || || || | | ||||||||| Sbjct 29664 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 29723 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || |||||||| || | || ||||| Sbjct 29724 ATCCAGAAAGAATCAACGTTGCACTTAGT 29752 >seq151 Length=34927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 243/367 (66%), Gaps = 14/367 (4%) Strand=Plus/Plus Query 128910 AATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACC---AAT 128966 |||||| | ||||||||| ||| ||| | | || |||||||||||||| | ||| Sbjct 29267 AATATTTAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAAT 29326 Query 128967 CAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTAT 129026 | |||| | || |||||||| || |||||||| ||| |||| || || || Sbjct 29327 CGCCTTTTGC---TTGATTTCCCAAACTGTTTTGTACTTTTCTTTCACATGAGAAGGAAT 29383 Query 129027 TTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTT 129086 ||| | || || || ||| ||| | | || | |||| ||| | | || | | Sbjct 29384 TTCAGCGATATTTTGTACGGAACCGC-GATCGCGAAGGATTTGATTCCGAAC-GTCTGAT 29441 Query 129087 GT--ACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCA 129144 || ||||||||| | || | || || | | |||||||| | | | ||| || Sbjct 29442 GTCCACAAATTCATCTCAATAAGCTCTTCCATGAGATATTTGTTGACAATTGTAAATTCT 29501 Query 129145 CCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTG 129204 || || | ||||| ||| | | |||||| ||||||||||| | || || ||| Sbjct 29502 CCAGCGAGGACGCGTCGATTGAACATGTTGGAAGTGAACGGCTCGATAGACTCGCAATTG 29561 Query 129205 CCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA--CGCAAAGCGAGTTTCGCA 129262 || | ||||||||||||| ||||| ||||| ||| | ||||| |||||||| | Sbjct 29562 CCGAGAATTTGAGCCGTTGAGGCGGTTGGCATCGGAGCGAGCAGCAAA--GAGTTTCGGA 29619 Query 129263 AACCGTG 129269 ||||| Sbjct 29620 TTCCGTG 29626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419671049862145