Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq546 118 1e-21 seq8657 91.5 1e-13 >seq546 Length=49788 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||| || || | ||| || ||||| ||||| |||||||| | Sbjct 29543 TCCACCACGGAGGCGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCCGC 29484 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| || || ||||| |||||||||||| |||||| || |||||||| ||||| Sbjct 29483 AAGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGG 29424 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| || || ||| | | |||| ||||| | | ||| || Sbjct 29423 AATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAAC 29364 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 ||| | || | || || || || || ||||| |||||||||||||||| Sbjct 29363 TTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCATGG 29314 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||| || || | ||| || ||||| || || |||||||| | Sbjct 29771 TCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGC 29712 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || || ||||| |||||||||||| |||||| || |||||||| ||||| Sbjct 29711 AAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGG 29652 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||||||| ||| ||| ||| | |||| || | ||||| | ||| | Sbjct 29651 AATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTG-TCAATAGTGTCTGATGACTCTA 29593 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || |||| ||||| ||||| |||||||| Sbjct 29592 CTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCAT 29544 Score = 100 bits (110), Expect = 3e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 126883 TGCT-CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAAT 126941 |||| ||||| || | || | |||| ||| | |||||||||||| ||||| ||||||| Sbjct 30231 TGCTACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAAT 30172 Query 126942 CGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGG 127001 | | | |||||| || || || ||||| || || | || | || ||||| || | Sbjct 30171 CCGCAAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTG 30112 Query 127002 GAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCT 127061 |||| || || || |||||| ||| ||| ||| | | |||| || || | | | Sbjct 30111 GAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATT 30052 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| | || | ||||| || ||||| || || |||||||| ||||| Sbjct 30051 CCACTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 30000 >seq8657 Length=30266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| || |||||||| | | ||| || || || | |||||||| ||| | | Sbjct 25967 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 26026 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 |||| ||||| || |||||||| || || |||||||| || ||| ||| | | | Sbjct 26027 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 26086 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| |||||| | ||||| || | || | ||||| ||||| || || || || | Sbjct 26087 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 26146 Query 127104 AAATCTGCAT 127113 |||||||||| Sbjct 26147 AAATCTGCAT 26156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475434628119920