Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3374 84.2 2e-11 seq546 84.2 2e-11 >seq3374 Length=57302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || || || || |||| ||| || ||||||||||| || || || ||||| || Sbjct 26810 CCACCACGTAATCGTAGAACCAGATGTAACGTGCTTTCTTTCTGGATGTTGTAATCCGCT 26751 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || || |||| |||||||||||||| ||||||| | |||||| || |||| ||| Sbjct 26750 AATGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGGG 26692 >seq546 Length=49788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||||| ||| | || ||||| || || || ||||| || Sbjct 30226 CCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCA 30167 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| | || |||| |||||| ||| ||||||||| ||| ||||| || | || Sbjct 30166 AGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGA 30107 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| | || || | || |||| || || |||| ||||| Sbjct 30106 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATA--GTATCTGAAGATTCCA 30049 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| ||||| ||||| || || | || || || || || ||||| Sbjct 30048 CTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 30000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347322467698589