Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6453 143 3e-29 seq8657 104 2e-17 seq546 102 8e-17 >seq6453 Length=80198 Score = 143 bits (158), Expect = 3e-29 Identities = 406/616 (66%), Gaps = 12/616 (2%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||| || |||||||| ||||| | || || || | ||||| || || ||| Sbjct 49253 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATT--TGA 49196 Query 132947 AAGTCAAG--CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 || ||| || ||||| | || ||||| || ||||||||||| | | ||| || Sbjct 49195 AAAGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCC 49136 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT- 133063 || || |||| || ||||||||||| || || |||| | || | |||| ||| | Sbjct 49135 GGAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATA 49076 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 ||||| || ||| || |||||||| || || | | |||||||| || |||| Sbjct 49075 CTTTGGAT-CGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTT 49017 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA-GGAACGC--ACGTAGGTGTCGATGA 133180 | || ||| | ||| | |||| ||| | ||| | | ||| || || || | Sbjct 49016 CAATCGCGCATAGTAAATGCTGTTT---TTCGGTTGGATCTTTGATGTATGTATCAATCA 48960 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 |||||||| ||||||||||| || || || || ||||| || || |||||||| | Sbjct 48959 ATAACGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATC 48900 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300 | || || | || || || |||| | | | |||||||| || || || | Sbjct 48899 GAGCTTCCGGGATTTGAACCTCACTGCTGAAATTCATGGCGAGATTTTCATTAACAATCC 48840 Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 | || ||||| || || ||||||| |||||| ||||| || || | ||| ||||| | Sbjct 48839 CATCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATA 48780 Query 133361 AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 |||||| | |||| | || || | || || |||||||||| | Sbjct 48779 TATTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTG 48720 Query 133421 CCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 |||| ||||| || ||||| ||| || || || | |||||| ||||| | ||||| | Sbjct 48719 CCTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGC 48660 Query 133481 GGCGGGGGTTTTCGCG 133496 || || ||||| || Sbjct 48659 GGTTCGGATTTTCTCG 48644 >seq8657 Length=30266 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||| || || ||||| || ||||| ||||| | || ||||| | Sbjct 26160 AAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATC 26101 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | | | || | || || | ||||| || |||||||| |||| Sbjct 26100 ATCCGACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGA 26041 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| | |||| ||| || ||||| |||| |||| || || ||| || || Sbjct 26040 CCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTA 25981 Query 38420 CAACATCCAAAA 38431 |||||||||||| Sbjct 25980 CAACATCCAAAA 25969 >seq546 Length=49788 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || ||||| || || |||||||| || | || |||||| | | Sbjct 29771 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATC 29830 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || |||| ||||| || |||||||| | || | Sbjct 29831 GGACACTATTGACAACG-TGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATC 29889 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| || ||||| || || |||| || || || || |||| Sbjct 29890 AGCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACA 29949 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| || ||| | ||| |||| |||||||| ||| Sbjct 29950 ACATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGT 29987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| ||||| || ||||| | || || ||||| || || | || || ||| | | Sbjct 29543 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATC 29602 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || |||| ||||| || |||||||| | || | Sbjct 29603 AGACACTATTGACAACG-TGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATC 29661 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| || ||||| || || |||| || || || || |||| Sbjct 29662 AGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACA 29721 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| || ||| | ||| |||| || ||||| ||| Sbjct 29722 ACATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGT 29759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500103194702720