Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6453 302 5e-77 seq151 188 8e-43 >seq6453 Length=80198 Score = 302 bits (334), Expect = 5e-77 Identities = 623/911 (68%), Gaps = 22/911 (2%) Strand=Plus/Minus Query 18675 ATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCA 18733 |||||| |||| | ||| ||||| || || |||||||| | | || || ||| |||| Sbjct 49531 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAAT-CATATCCA 49473 Query 18734 TAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTC 18793 | | ||||| ||||| | | ||||| || ||| || | | | || | || Sbjct 49472 TCCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAATC 49413 Query 18794 TATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAA 18853 |||||| ||||| | || ||| ||||| | |||||||||| |||| | | Sbjct 49412 GATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGA 49353 Query 18854 CAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATA 18913 | || |||| |||| | |||||||||||| || | || || || || || || | Sbjct 49352 CTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCAT 49293 Query 18914 CAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAA--ACATCAAACATGCAAAATC 18971 || |||| | | || ||| | | || | |||||| ||||||||| || Sbjct 49292 GAATAGAGCCTTC--TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAGTC 49235 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 |||||||||||| || || | ||| || | ||||| ||||| | |||||||||| Sbjct 49234 ACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAA 49175 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCTTCTA 19090 ||||| ||| || | ||| |||||||| ||| |||||||| || || || || ||||| | Sbjct 49174 TCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCGGAGAAAAAGATTCCTTCGA 49116 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAG-CATCATTATTATGAATCCATTTC 19149 | || ||||| || || | ||||||| || ||| || ||| || || ||||||| Sbjct 49115 CGGCCGCAAAGGCTACCACTCTTTCTGCA-AACGAGGCATACTTTGGATCGCACCATTTC 49057 Query 19150 AGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATAC 19209 | ||||| | || || || | || || || ||||| || || | |||| || Sbjct 49056 AACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGC---ATAG-TAA 49001 Query 19210 ATAC-GCTCATCTGT---ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 || | | | || || |||||| | |||| ||| |||||||| |||| ||| || Sbjct 49000 ATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGA 48941 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 || ||||||||||| || || || ||||| ||||| |||| ||||| | || || || Sbjct 48940 GTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGAAC 48881 Query 19326 TTCACTAC--AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | ||| || | | | | |||||||||||| || |||||||| |||||||| Sbjct 48880 CTCACTGCTGAAATTCAT--GGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAAG 48823 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTA 19443 || || || || ||||| ||||| ||| | |||| | || || ||| ||||| Sbjct 48822 AAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATATTAAGCCAGTCATTC 48763 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 || || | ||||| | |||||| | |||||||| ||||||||||| |||||| Sbjct 48762 ATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATAC 48703 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTA 19563 |||| ||| || ||| | |||||| ||||||| ||||| | || ||||||| Sbjct 48702 ATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTCTCGG 48643 Query 19564 AGAATAGGTTC 19574 |||| |||||| Sbjct 48642 AGAAAAGGTTC 48632 >seq151 Length=34927 Score = 188 bits (208), Expect = 8e-43 Identities = 419/626 (67%), Gaps = 2/626 (0%) Strand=Plus/Plus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 ||||||| | ||| || ||||||||||| ||||||||| | | || | ||||| Sbjct 30379 TCATAAACAGATCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGTTCAT 30438 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | ||| |||| | ||||| ||||| || | ||||| |||||||| || |||| || Sbjct 30439 TTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGAT 30498 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | ||||| | ||| || || ||| |||||||| | |||| || || | | Sbjct 30499 AAATTGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCAT 30558 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | |||||| ||||| ||||| || | ||||| || || |||||||| Sbjct 30559 TGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAAC 30618 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | | | | ||||| ||| | || ||||| || ||| || || || Sbjct 30619 TGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATAC 30678 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| || || || ||||| || || ||| ||||||| ||| ||||| Sbjct 30679 ACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATA 30738 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 ||||||| || | ||| || || ||||| | ||| || | || |||| ||||| Sbjct 30739 GAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCAT 30798 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| | || | ||| | || ||| ||||| | ||| | ||| | || | || Sbjct 30799 GCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTT 30858 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA-ACAATTTTGTTA 48749 ||||| || | || || ||||||| ||||| ||| || | |||| ||| |||| | Sbjct 30859 TGTGTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTT-CCA 30917 Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAG 48809 || | ||| ||||| ||||| |||| |||||||| |||||||||| ||| |||| Sbjct 30918 TTCACACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAG 30977 Query 48810 TCGTTATCATTAATAATTGATGAATT 48835 || ||||| ||||| | ||||| Sbjct 30978 TCTCTATCACCGATAATGGCGGAATT 31003 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 47012 TGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACT 47071 |||||| | ||| ||||| || ||||| | |||| ||||| | ||||||||||| Sbjct 29174 TGTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 29233 Query 47072 AGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 ||| | |||| | | || || | ||| |||||||| || |||||||||||| ||| Sbjct 29234 AGTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAAT 29293 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 | || |||| ||| || ||||| || ||||| || |||| || ||||| ||||| Sbjct 29294 GTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTGT 29353 Query 47192 TTTATAAATTTGTTT 47206 ||| || ||| ||| Sbjct 29354 TTTGTACTTTTCTTT 29368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562030575534120