Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq546 123 5e-23 seq8657 93.3 8e-14 >seq546 Length=49788 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||||| ||||| || || || | ||||| ||| || ||||| Sbjct 29773 ATTCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCC 29714 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| | || || | |||||| ||||| ||||| | | || |||||||| Sbjct 29713 GCAAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGA 29654 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || || || || || |||| ||||| || ||| Sbjct 29653 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCT 29594 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| || ||||| ||||| || ||||| | ||||||||||||| Sbjct 29593 ACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 29543 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||| | |||||| | ||| | ||| | |||| |||||| || || ||||| | Sbjct 30228 TACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCG 30169 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || ||| | || |||| ||||||||| ||||| |||| | || || || || | Sbjct 30168 CAAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAG 30109 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||||||| || || || || || ||||| |||| |||||| ||||| | Sbjct 30108 GAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCA 30049 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||| | ||||| ||||| ||||| | || |||| ||| || |||||| Sbjct 30048 CTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 29999 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | ||||| || || || | ||||| || || ||||| Sbjct 29545 ATTCCACCACGGAGGCGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCC 29486 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| | || || | |||||| ||||| ||||| | | || |||||||| Sbjct 29485 GCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGA 29426 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || ||||||||| || | ||||| || || Sbjct 29425 GGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCA 29366 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| ||||| || ||||| | ||||| | ||| |||||||| Sbjct 29365 ACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 29316 >seq8657 Length=30266 Score = 93.3 bits (102), Expect = 8e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | | ||||| | || ||||||||||| || || || || || | Sbjct 25974 GATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAATCAAACG 26033 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| || || || |||||||| || ||||| || || || |||||| || | Sbjct 26034 CTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTATCGATGGT 26093 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||||| || || ||||| || ||||| || || | ||| || | || ||||| Sbjct 26094 GTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGAAAATCTG 26153 Query 192534 CATT 192537 |||| Sbjct 26154 CATT 26157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984339572234550