Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq546 190 4e-43 seq3466 120 6e-22 seq8657 109 1e-18 seq464 100 6e-16 seq3374 98.7 2e-15 >seq546 Length=49788 Score = 190 bits (210), Expect = 4e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||||||||| || ||||||||||| || || ||||| | || ||| ||| Sbjct 29530 CGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCG 29471 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 |||||||||||||||||||| ||||| || | ||| ||||| ||||| |||||||| || Sbjct 29470 TCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTG 29411 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| || |||||||| || ||||| || || || ||||||||||| || Sbjct 29410 TCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATG 29351 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||| || ||||| |||||||| Sbjct 29350 GTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 29316 Score = 188 bits (208), Expect = 1e-42 Identities = 172/217 (79%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||||||||| || ||||||||||| || || ||||| | ||| | | || Sbjct 29759 ACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCC 29700 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||||||||||||||||||| ||||| || | ||| ||||| ||||| ||||||||||| Sbjct 29699 GTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTT 29640 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || ||||| || || | ||||||||||||||||| Sbjct 29639 GTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCTACTTCCAAAGTTAT 29580 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| || || ||||||||||||||| Sbjct 29579 AGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 29543 Score = 167 bits (184), Expect = 5e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||| || ||||||||||| || || ||||| | || ||| || Sbjct 29987 ACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCC 29928 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||||||||||||| || || ||||| || | ||| ||||| ||||| ||||||||||| Sbjct 29927 GTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTT 29868 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || ||||| || || | || |||||||||||||| Sbjct 29867 GTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTAT 29808 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || |||| |||||| ||||| || |||||| Sbjct 29807 GGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 29771 >seq3466 Length=44099 Score = 120 bits (132), Expect = 6e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| | | ||||||||| ||||||||||| ||||| ||||| | |||||| || ||||| Sbjct 36131 TAGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGG 36072 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTA 82761 ||||||||||| ||||||||| ||||| || ||||| |||||||| || | ||||| Sbjct 36071 AATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTA 36013 Query 82762 CTTCCAAAGTTATCGTCTTGCCT 82784 |||| | || || || || ||| Sbjct 36012 CTTCGAGTGTAATTGTTTTTCCT 35990 >seq8657 Length=30266 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || || ||||| | || ||| ||||| || | ||||||||| || || | Sbjct 25967 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 26026 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | | ||||| || ||||| ||||||||||| ||||||||||| || || ||||| | Sbjct 26027 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 26086 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | || || || | ||| || || | ||| || || || || || | ||||| || | Sbjct 26087 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 26146 Query 82801 ATATCTGCATTATTA 82815 | ||||||||| ||| Sbjct 26147 AAATCTGCATTCTTA 26161 >seq464 Length=101 Score = 100 bits (110), Expect = 6e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 ||||||||||||||||||||||| ||||| || | ||| ||||| ||||| ||||||||| Sbjct 4 CCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCC 63 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || || || ||||| || || || || ||||| || || Sbjct 64 TTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTC 101 >seq3374 Length=57302 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| |||||||||||||| || ||||| || ||||||||| | || || Sbjct 26635 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATCGTATCAGCCGACTCCACG 26576 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||||||| || || || ||||| ||||| |||||||| Sbjct 26575 TCCAATGTGATCGTCTTCCCGGTTAAAGTCTTGACAAAAATCTGCAT 26529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981687150634087