Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq8657 89.7 5e-13 seq546 86.0 6e-12 >seq8657 Length=30266 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 |||| || || |||||||| | | ||| || || ||||| | || || || ||| | Sbjct 25967 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCG--TCCTCCAATTGTTTTCCTGCGAA 26024 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 ||| | ||||| ||||||||||| || ||||||||||| ||||| ||| | | Sbjct 26025 AATCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATT 26084 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 || | ||||||| | || || || | |||| ||||| ||||| || || || || Sbjct 26085 ATCGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGAC 26144 Query 133649 GAAAATCTGCAT 133660 |||||||||||| Sbjct 26145 GAAAATCTGCAT 26156 >seq546 Length=49788 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || |||||||| || |||||||| | | ||| ||| || || || || || Sbjct 29968 GTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTACCG 29909 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || || ||||| || ||||| || ||||||||||| |||||| ||| Sbjct 29908 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTC 29849 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | | ||| || || | || | |||||| || ||||| || Sbjct 29848 ACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTCCCAGTCAGCGTC 29789 Query 133644 TTTACGAAAATCTGCAT 133660 || || ||||| ||||| Sbjct 29788 TTAACAAAAATTTGCAT 29772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || |||||||| || |||||||| | | ||| ||| || || || || || Sbjct 29512 GTTGATTCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCA 29453 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || || ||||| || ||||| || ||||| ||||| ||||| ||| Sbjct 29452 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTT 29393 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | |||||| | | ||| || || | |||| ||| || || || || ||| Sbjct 29392 ACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTT 29333 Query 133644 TTTACGAAAATCTGCATGG 133662 || || ||||||||||||| Sbjct 29332 TTCACAAAAATCTGCATGG 29314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483353525952920