Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq546 125 2e-23 seq8657 86.0 1e-11 >seq546 Length=49788 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||||| || ||||| || |||||||||||||| || ||| ||| Sbjct 29319 CAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCAGAC 29378 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| |||||||||||| || || ||| Sbjct 29379 ACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAGCAA 29438 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| ||||| || | ||||| ||| | || | || ||||||||| | Sbjct 29439 CGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAACATT 29498 Query 206353 CAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 29499 CAGAAAGAATCAAC 29512 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || ||||| || || |||||||||||| ||| || || |||| Sbjct 30015 AAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCAGATACTATCGACAAT 30074 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||||||| || ||| ||| | || || || Sbjct 30075 GTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAGCAACGTCTAATTTTT 30134 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||| ||| | || | || ||||||||| | |||||||||||| Sbjct 30135 GCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAACATTCAGAAAGAGTCT 30194 Query 206365 ACTCTTCACCTTGT 206378 || ||||| || || Sbjct 30195 ACGCTTCATCTGGT 30208 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | || |||||||| || ||||||||||| || || ||| Sbjct 29547 CAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATCAGAC 29606 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||||||| || || ||| Sbjct 29607 ACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAA 29666 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| ||||| || | ||||| ||| | ||| | || ||||||||| || Sbjct 29667 CGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAACATC 29726 Query 206353 CAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 29727 CAGAAAGAATCAAC 29740 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || ||||| || ||||||||||| || || ||||| | || Sbjct 29787 AAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATCGGACACTATTGACAAC 29846 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || ||| | || |||||| Sbjct 29847 GTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAACGTCTGATCTTC 29906 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | ||||| ||| | || | || ||||||||| |||||||||| || Sbjct 29907 GCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAACATCCAGAAAGAATCA 29966 Query 206365 AC 206366 || Sbjct 29967 AC 29968 >seq8657 Length=30266 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| |||||| | || || ||| || ||| Sbjct 26153 CAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCCGAC 26094 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || ||||||||| || ||| || Sbjct 26093 ACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAACAG 26034 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| ||||| || ||||| || || | || | || ||||||||| || Sbjct 26033 CGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAACATC 25974 Query 206353 CAGAAAG 206359 || |||| Sbjct 25973 CAAAAAG 25967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181652223234493